Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1085 ATGGGTAGTGTCGCGAATTTGAAAAAACCAGCAAGTGGAGCTGCTTTTCGAGGAGAAGACGTATTACCCGTTTCTAACGGAGTGGTGTCGACAGCGACCAGTGGTAGTAGAAAATGGACGAATCTGTTGCCTCTGTTCGTGGGCCTAGTGGTCATAGCAGAGATCGCGTTTCTGGGCCACCTCGACATGGCCAAAAACGCCGATTTGGTCGATTCCTGGGCAGACTTGTTCTATATATCGGCCCCACCTTTCCGTGAGCTCGAATCAGATGCCGATGAGTTCAATCTTGCAGGAGTTGATAGTCATGGAATTTCAGAATCGGAGAGCTGTGAAGAGTGGCTAGAGAAAGAAGATGCGGTTGCATATTCTAGGGATTTTGCTAAAGATCCCATCTTGGTTTCTGGTGCAGAGAAGGAATGGAGGTCTTGTGCTGTAGGATGTCAATTTGGGTTTAATCCGAGTAAGAAACCGGATGCTGCATTTGGTCTATCTCGTGAAAATGGAGTAGCCGGAATTCTACGATCCATGGAATCATCGCAGTACTATGCAGAAAACAATATTGATATGGCAAGACGGAGAGGATACAAAATTGTAATGACTACTAGTCTCTCATCGGATGTTCCTGTCGGGTATTTTTCGTGGGCTGAGTATGATATCATGGCGCCTGTTCAGCCCAAGAGGGAGACTGCTCTTGCAGCTGCTTTCATTTCAAATTGCGGTGCTAGAAACTTCCGTCTGCAAGCTCTAGAGGCTCTCGAGAAGTTCAAGATCAAAATCGATTCTTATGGTGGTTGCCATAGAAACCGTGATGGAAGAGTGGACAAAGTGGAAACTCTGAAGCGTTATAAATTTAGCTTGGCATTTGAGAATTCAAACGAGGAGGATTATGTCACAGAAAAGTTTTTCCAATCTCTAGTCGCAGGAACTATTCCTGTTGTGGTCGGTGCCCCTAATATTCAAGACTTTTCCCCTTCCCCTAATTCACTTCTACATATTAAAGAACTTTCTGATGCTGAGTCCATTGCCAAGTCCATGAAGTACCTTGCTCAAAACCCTGAAGCATATAACCAGTCATTGAGGTGGAAATATGAGGGTCCGTCTGATTCTTTCAAGGCCCTAGTGGATATGGCAGCTGTGCACTCTTCATGCCGCCTTTGCATCCACCTGGCGACTACAATCCATGAGAAAGAAGAAAAGAGTCCGGGTTTGGAAAGTCGTCCTTGCAAGTGCAGTAAAGGATCAGAGACTGTATATCATTTATATGTAAGAGAAAGAGGAAGGTTTTATACAGAGTCCGTATTCTTAAGGTCTGGGAATTTGACTTTGGAGGGGTTAGAATCCGCCGTGCTTGCAAAATTCCACTCTTTGAAACATGTTCCGATTTGGAAGGGGGAAAGACCGGAAAGCATAAAAGGGGAGGACAAGCTGAAAGTCTACAGAATATATCCGGTTGGGTTGACTCAGAGGCAAGCATTGTATGCTTTCCGGTTTAAACGGGACGAGGATCTTAGAAGTCACATAGAGAGCAATCCCTGTTCGAAGTTTGAAGTCATATTTGTCTAA 1563 44.91 MGSVANLKKPASGAAFRGEDVLPVSNGVVSTATSGSRKWTNLLPLFVGLVVIAEIAFLGHLDMAKNADLVDSWADLFYISAPPFRELESDADEFNLAGVDSHGISESESCEEWLEKEDAVAYSRDFAKDPILVSGAEKEWRSCAVGCQFGFNPSKKPDAAFGLSRENGVAGILRSMESSQYYAENNIDMARRRGYKIVMTTSLSSDVPVGYFSWAEYDIMAPVQPKRETALAAAFISNCGARNFRLQALEALEKFKIKIDSYGGCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIQDFSPSPNSLLHIKELSDAESIAKSMKYLAQNPEAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATTIHEKEEKSPGLESRPCKCSKGSETVYHLYVRERGRFYTESVFLRSGNLTLEGLESAVLAKFHSLKHVPIWKGERPESIKGEDKLKVYRIYPVGLTQRQALYAFRFKRDEDLRSHIESNPCSKFEVIFV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8882647 8885153 - Conep12aG0111900.1 Cone12ag1085 449929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1085 520 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 227 394 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Cone12ag1085 520 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 177 369 - -
Cone12ag1085 520 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 70 492 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Cone12ag1085 520 Gene3D - 174 369 IPR038577 -
Cone12ag1085 520 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 119 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1085 Cone-Chr12:8882647 Cone3ag1179 Cone-Chr3:30459668 2.05E-252 dispersed
Cone10ag0987 Cone-Chr10:6682381 Cone12ag1085 Cone-Chr12:8882647 1.12E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1085 K00753 - vvi:100255469 775.393