Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1088 ATGGCGTCTCTACTTTCTATACCAAATCCTCTGCAAAAGCTCTCTTTAATGGCTGCATCTTCTGTAGCTACTACCATCCCTTGCTTGTTTGCTTCAATGGGTGCTGGAAATCGCATAAAAACAGATGCTCCGAAAAAACCCTCTTCGAAACCCGTCAAAACCATGTCGCCATTTCCACCTCTAACTAGTACGAGTTCTTGCTCTGTTTCCACAAGCACTGTCCTCAAGAAGGTTCTGGTTCCAATAGGATTTGGTACAGAAGAAATGGAAGCTGTTATTATGGTTGATGTTCTTCGCCGAGCAGGAGCCAATGTGACTGTGGCTTCTGTTGAGCCAGAACTCGAAATCAAAGCTTCTGGTGGTGTCAGATTGGTTGCTGATACCTCCATTGCTGCCTGCTCCCATGAAATTTTCGATCTTGTTGCTTTGCCGGGAGGAATGCCCGGCTCTGTTCGGTTGAGAGATTGTGAAATTCTTCGCAAAATTACAAGCAAACAAGCCGATGAAAATAGGCTTTATGGAGCTATATGTGCTGCTCCTGCAGTTACTCTCCTGCCATGGGGTCTTGTGAAAAGAAAGCAGACAACTTGTCACCCTGCATTCATGGACAAGCTTCCAACATTCTGGGCCGTTAAATCAAAAATCCAAGTTTCAGGAGAGCTTACTACAAGCCGTGGTCCTGGAACTTGTTTCGAATTTGCCCTAACTTTAGTTGAGCAGCTCTTTGGCGAGTCAGTTGCCAAAGAAGTTGCAGAAATGCTGCTATTACCTACATCCAATGATTTTCCGAGAAAGGAAGAGTTTAACAATGTGGACTGGTCTGTTAATCACCCACCTCGTGTTCTTATTCCTGTTGCAAATGGATCTCAAGAAATAGAGCTAGTAACCATTGTGGATATCTTACGGCGAGCTAAGGTGGATGTTGTGATTGCTTCAGTTGAAAGATCCCTGCAAATTTCAGCTTCTAGAAGCACCAAAATAATTGCTGACATGTTCATTGGTGAAGCCGCAGAGTCTATATACGATTTAATCATTCTTCCGGGGGGAGTTGTAGCGGATGAGCGGCTACAAAAATCGAGAATCTTAAAGAAGATGCTTAAAGAACAAGAATCTTCGGGTAGAATCTACGGAGCAGTTTGCTCTTCACTAACAGTTTTGCATAAACAAGGCCTGCTTAAGGAGAAGAGAGCCACGGGCCATCCATCAGTAGTAACTGAACTCGCAAATGAAGTAGTAAACAGTGCCAAGGTAATTATTGATGGTAAAGTGATAACGAGCAAGGGACTAGCTAATGTAATTGATTTTGCGTTGGCTATTGTGAGCAAGCTTTTCGGTCATGGGAGGGCTAGAAGTGTTGCAGAGGGTCTTGTTTTTGAATATCCGAGGAGTGGCTAA 1395 43.87 MASLLSIPNPLQKLSLMAASSVATTIPCLFASMGAGNRIKTDAPKKPSSKPVKTMSPFPPLTSTSSCSVSTSTVLKKVLVPIGFGTEEMEAVIMVDVLRRAGANVTVASVEPELEIKASGGVRLVADTSIAACSHEIFDLVALPGGMPGSVRLRDCEILRKITSKQADENRLYGAICAAPAVTLLPWGLVKRKQTTCHPAFMDKLPTFWAVKSKIQVSGELTTSRGPGTCFEFALTLVEQLFGESVAKEVAEMLLLPTSNDFPRKEEFNNVDWSVNHPPRVLIPVANGSQEIELVTIVDILRRAKVDVVIASVERSLQISASRSTKIIADMFIGEAAESIYDLIILPGGVVADERLQKSRILKKMLKEQESSGRIYGAVCSSLTVLHKQGLLKEKRATGHPSVVTELANEVVNSAKVIIDGKVITSKGLANVIDFALAIVSKLFGHGRARSVAEGLVFEYPRSG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8903832 8906238 - Conep12aG0112200.1 Cone12ag1088 449932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1088 464 FunFam Protein DJ-1 homolog C 273 461 - -
Cone12ag1088 464 NCBIfam DJ-1 family glyoxalase III 280 454 IPR006287 -
Cone12ag1088 464 NCBIfam DJ-1 family glyoxalase III 77 252 IPR006287 -
Cone12ag1088 464 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 281 458 IPR050325 GO:0005737(PANTHER)|GO:1903189(PANTHER)
Cone12ag1088 464 SUPERFAMILY Class I glutamine amidotransferase-like 76 261 IPR029062 -
Cone12ag1088 464 FunFam Protein DJ-1 homolog C 70 259 - -
Cone12ag1088 464 Pfam DJ-1/PfpI family 76 240 IPR002818 -
Cone12ag1088 464 Pfam DJ-1/PfpI family 280 441 IPR002818 -
Cone12ag1088 464 SUPERFAMILY Class I glutamine amidotransferase-like 278 463 IPR029062 -
Cone12ag1088 464 CDD GATase1_DJ-1 78 241 - -
Cone12ag1088 464 CDD GATase1_DJ-1 281 443 - -
Cone12ag1088 464 Gene3D - 273 463 IPR029062 -
Cone12ag1088 464 Gene3D - 70 267 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1088 Cone-Chr12:8903832 Cone8ag1130 Cone-Chr8:9959768 6.41E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g402 . . . . . Bpe12g00056 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1088 . . . . . . . . Blo13g00575 Bda15g00034 . . . . . . . . Cma11g01744 . Car11g01096 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010954 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30