Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1099 ATGGAGGACGAAGAGGAGCTCCTCTCCGATTCTGTTTCTGATTCCAGCGACTCTGGCGAAGAATACACTGGCGATTGCAATGACAACCTGGTAGATGAAGAAGAGGATTTTGAAAATGAAAAAGACGCAGGTCTTTCTCCTCCATCTGGTGAGGATCGGAAATCGCAGAATGTCGACGCTCTGGTAAGAGGTAATCTTGTTGTGAGGAGACAGTCCCTACTTCCACGAGTTCTTTCAGTGACAGAAAGAGCAGCGGGGTGCAGGAAACCCTTTAAGCCTCCATGCTCTAATGGCTATGATGGTGAGAAGGACCAGCTTGTCCGACGACTCTGGGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCGAGGCCAGCATTGCTTACAATCACCAACCAGTTGAAGATACCAAACATCGCTGAAAAAGATGAAGAGGAGGAAAGCGTGACTCTGCCACTTGGAATTGAACCTTTGATTTTGTGGCAACCTGAAGAATCTGAGGAGAGTTCTGCTAATTCGGTGCCAATAGTGGTCGAACTGCTGCTAGTTAAATTTCTTCGGCCCCATCAAAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCCGGCCTATATTCCGCTGCAAATGTATTTGGATGCATTCTGGCAGATGACATGGGTTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACTCTACTACGGCAAGGGTTTGATGGGAAGCCGATGGTTAAAAAAGCTATAATAGTCACTCCCACCAGTCTTGTAAGCAACTGGGAAGCTGAAATCAAGAAGTGGGTTGGTGAAAGAGTGCAGCTTATGGCTCTCTGTGAAAGCACCAGAGATGATGTTGTCTCAGGCATTGACAACTTCACAAGTCCCCGCAGCTCCTTAAAGGTACTGATTCTTTCATACGAGACATTTCGGATGCATTCATCAAAATTTAGCCAAAGTGAATCATGTGATCTACTTATTTGTGATGAGGCTCATCGGCTTAAGAATGACCAGACTTTGACAAATCGGGCATTGGCGGCTTTAACATGCAAACGGCGTATTTTATTATCTGGAACGCCTATGCAGAATGACCTAGAAGAGTTCTTTTCCATGGTTAACTTTACTAATCCAGGGATCTTGGGTGATGCTGCATATTTTCGACGTTACTATGAGACACCAATCATTTGTGGAAGAGAACCTACTGCTACTGAAGAAGAGAAAAGGCTAGGTGTTGAGCGCTCCGCAGAACTAAGTGGGAAGGTTAATCAGTTTATATTGCGGAGGACTAATGCTCTGTTATCAAATCACTTGCCACCAAAGATTGTTGAAGTTGTTTGCTGCAGGTTGACTCCTCTTCAACTAGACCTTTATAACCATTTTATACAATCAAAAAATGTTAAACAGGCGATTACTGAAGAAGTGAAGCAATCCAAAATTTTGGCTTACATAACTGCTCTTAAAAAGCTGTGCAATCATCCTAAGCTTATCTATGATACTCTAAAGAGTGGGAGTCCAGGAACTTCAGGCTTTGAGGACTGCATTCGCTTTTTCCCTTCAGGAATGTTCTCTGGAAGGTCTGGGTCGTGGACTGGTGGAGATGGGGCCTGGGTTGAACTTTCAGGGAAAATGAATGTCTTGGCTCGATTACTGGCCCATTTACGCCACAGAACTGATGACCGTATTGTCCTTGTTTCAAACTACACTCAGACACTTGATCTGTTTGCTCAATTATGTCGTGAAAGAAGATACCCATATCTGAGGCTTGATGGAACTACATCTATCAGTAAAAGGCAGAAGTTAGTCAATTGCTTTAATGACATGACAAAGGATGAATTTGTGTTTCTCTTGAGCAGTAAGGCGGGTGGTTGTGGCCTAAATTTGATTGGTGGAAATCGACTAGTTTTATTTGATCCAGACTGGAATCCTGCCAATGATAAACAAGCCGCGGCAAGAGTCTGGAGGGATGGACAGAAGAAGAGAGTATATATCTACCGTTTTTTGAGTACTGGAACAATTGAAGAAAAGGTGTACCAGCGGCAGATGTCAAAAGAAGGGCTTCAAAAAGTTATTCAGCAGGATCAAACAGATGGCTCTGCTGGACATGTGAATCTTCTATCGGCAGAAGATCTACGTGATCTATTCACACTTCATGATGTGAGATCTGAAATCCACGAAAATATGAACTGTATCCGTTGCCAAAATTGCAATGATAGGCCTGAGGATGGAGATGGAAACCAGGCATCAAATACAGATTGTCAGTCTGATCAAGAAACTGATATAGGAGGATTTGCGGAACTGACAGGATGCTTGCACAAGTTGAAGCACTCAGAGAAACAGGTAGGGACTCCTTTAGAAGAAGATTTAGCTAGTTGGGGGCATCATTTCTCGTCCATGACAGTACCTGATGCTATTCTTCAAGCTTCTGGTGGTGATGAGGTAACGTTTGTTTTTGCAAACCAAGTGGATGGGAAACTCAAGCCCGTTGAATCAAAAATGATCCCGAAAATGGAGGGAGCAGGAAGAAGTGAGAATGATACAAAGCTAAACCAAAATCAAAACCACAGATCTTATAGGAACACTCTATCTCTATCTTCCAAGCCCTTTCAACGGACAATGCTAAAACCTGTTGGAATTAGTTCAGTTCCAGCAGGACCTGCTTTAAAGCATAAAGCTTTCTCAGTAGGTGATCAGTATCCCCACAAAAAACTGTCTCCTAATGTTCTAAGACATGATGATGACTTTGATTAA 2742 43.07 MEDEEELLSDSVSDSSDSGEEYTGDCNDNLVDEEEDFENEKDAGLSPPSGEDRKSQNVDALVRGNLVVRRQSLLPRVLSVTERAAGCRKPFKPPCSNGYDGEKDQLVRRLWARKRFVPWGSSRPALLTITNQLKIPNIAEKDEEEESVTLPLGIEPLILWQPEESEESSANSVPIVVELLLVKFLRPHQREGVQFMFECVSGLYSAANVFGCILADDMGLGKTLQSITLLYTLLRQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERVQLMALCESTRDDVVSGIDNFTSPRSSLKVLILSYETFRMHSSKFSQSESCDLLICDEAHRLKNDQTLTNRALAALTCKRRILLSGTPMQNDLEEFFSMVNFTNPGILGDAAYFRRYYETPIICGREPTATEEEKRLGVERSAELSGKVNQFILRRTNALLSNHLPPKIVEVVCCRLTPLQLDLYNHFIQSKNVKQAITEEVKQSKILAYITALKKLCNHPKLIYDTLKSGSPGTSGFEDCIRFFPSGMFSGRSGSWTGGDGAWVELSGKMNVLARLLAHLRHRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNCFNDMTKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQDQTDGSAGHVNLLSAEDLRDLFTLHDVRSEIHENMNCIRCQNCNDRPEDGDGNQASNTDCQSDQETDIGGFAELTGCLHKLKHSEKQVGTPLEEDLASWGHHFSSMTVPDAILQASGGDEVTFVFANQVDGKLKPVESKMIPKMEGAGRSENDTKLNQNQNHRSYRNTLSLSSKPFQRTMLKPVGISSVPAGPALKHKAFSVGDQYPHKKLSPNVLRHDDDFD 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8947511 8953912 + Conep12aG0113500.1 Cone12ag1099 449943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1099 913 MobiDBLite consensus disorder prediction 1 58 - -
Cone12ag1099 913 Gene3D - 448 716 - -
Cone12ag1099 913 MobiDBLite consensus disorder prediction 892 913 - -
Cone12ag1099 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 376 IPR014001 -
Cone12ag1099 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 426 IPR027417 -
Cone12ag1099 913 SMART ultradead3 181 388 IPR014001 -
Cone12ag1099 913 CDD DEXHc_RAD54 185 426 - -
Cone12ag1099 913 MobiDBLite consensus disorder prediction 26 40 - -
Cone12ag1099 913 MobiDBLite consensus disorder prediction 841 862 - -
Cone12ag1099 913 Pfam SNF2-related domain 188 493 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone12ag1099 913 SMART helicmild6 570 654 IPR001650 -
Cone12ag1099 913 Pfam Helicase conserved C-terminal domain 540 654 IPR001650 -
Cone12ag1099 913 FunFam Predicted protein 448 522 - -
Cone12ag1099 913 PANTHER SNF2/RAD54 FAMILY MEMBER 49 820 IPR050496 GO:0005634(PANTHER)|GO:0007131(PANTHER)|GO:0015616(PANTHER)|GO:0045003(PANTHER)
Cone12ag1099 913 CDD SF2_C_SNF 537 665 IPR049730 -
Cone12ag1099 913 MobiDBLite consensus disorder prediction 833 862 - -
Cone12ag1099 913 Gene3D - 158 425 IPR038718 -
Cone12ag1099 913 Gene3D - 426 734 IPR027417 -
Cone12ag1099 913 FunFam DNA repair and recombination protein RAD54-like 532 698 - -
Cone12ag1099 913 FunFam DNA repair and recombination protein RAD54 156 425 - -
Cone12ag1099 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 543 704 IPR001650 -
Cone12ag1099 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 735 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1099 K10875 - - cit:102614093 1364.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0631 Cone-Chr10:3017110 Cone12ag1099 Cone-Chr12:8947511 1.38E-66 dispersed
Cone12ag1099 Cone-Chr12:8947511 Cone3ag1426 Cone-Chr3:33025145 6.76E-70 dispersed
Cone12ag1099 Cone-Chr12:8947511 Cone3ag0666 Cone-Chr3:3358854 1.49E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g427 Blo02g00835 . . . . . Bma05g00518 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1099 . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00442 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009997 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44501 PF04782 DUF632 5.10E-109 No_clan Cone TR