Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1101 ATGCAGGTAAAGGCCCTTAGTTTAGCTCTTCGCGGGAAGGGAATATTTGTGACCGTTGTTGATTTCTCTGAAGAAAGGGGAAGGGAAGTTGCCAAGCTGGTTGAAAAAGAAAATGCTAAATTTCACTCCGAGTTAGAATTCACTTCTGCTATTTTCGTAAAATGCGATGTGACGAATGCAAGGGATTTAGCTGCAGCTTTTGAGAAACACTTGGCAACATATGAAGGACTGGACATATGCATTAACAGTGCTGGAATTGTTACTCAAGTTCCATTCCGGAAGGATGTACATACATGGAGGCATACAATCGAAGTGAATCTAATGGCTGTCTTCGAATGCACTCGTATTGCAACAAGAATCATGCAGTCGTTGGAAAAACCTGGAGTTATTATTACTTTGGGGTCTTCTTCTGGTCTTTATCCGATGACAATGGATCCTATATATGCTGGTTCCAAAGGTGGTGTTGTGATGTTTACTAGATCACTTTCTCCTCTCAAACGTGAAGGTATTCGCATCAATGTCCTTTGCCCTGAGTTTGTTGAAACTGAGACGGGCACACTAGAGGGTGCTAAACTTGTTGCATTTCTGGATGGATATGTTCCTATGGATATGGTGGTAAAAGGTGCCTTTCAGCTCATTTCTGATGAGAGCAAAGGTGATTCATGCCTGTGGAGTACAAATCGCAGAGGAATGGAATATTGGCCCAATCCAGCAGAAAAAGCTAAATATATAATTCCGAAAACAAGTCTTCAGAAAAAATATTCATCGACAGTTCCGGTGAAAATCCATCTCCCTGAGAGTCTTGAAAGATAG 813 41.45 MQVKALSLALRGKGIFVTVVDFSEERGREVAKLVEKENAKFHSELEFTSAIFVKCDVTNARDLAAAFEKHLATYEGLDICINSAGIVTQVPFRKDVHTWRHTIEVNLMAVFECTRIATRIMQSLEKPGVIITLGSSSGLYPMTMDPIYAGSKGGVVMFTRSLSPLKREGIRINVLCPEFVETETGTLEGAKLVAFLDGYVPMDMVVKGAFQLISDESKGDSCLWSTNRRGMEYWPNPAEKAKYIIPKTSLQKKYSSTVPVKIHLPESLER 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8956358 8959456 + Conep12aG0113700.1 Cone12ag1101 449945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1101 270 PANTHER 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] 5 255 - GO:0005737(PANTHER)|GO:0016616(PANTHER)
Cone12ag1101 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 IPR002347 -
Cone12ag1101 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 IPR002347 -
Cone12ag1101 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 IPR002347 -
Cone12ag1101 270 PRINTS Glucose/ribitol dehydrogenase family signature 122 138 IPR002347 -
Cone12ag1101 270 PRINTS Glucose/ribitol dehydrogenase family signature 148 167 IPR002347 -
Cone12ag1101 270 PRINTS Glucose/ribitol dehydrogenase family signature 75 86 IPR002347 -
Cone12ag1101 270 PRINTS Glucose/ribitol dehydrogenase family signature 168 185 IPR002347 -
Cone12ag1101 270 Gene3D - 4 227 - -
Cone12ag1101 270 Pfam short chain dehydrogenase 5 184 IPR002347 -
Cone12ag1101 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 187 IPR036291 -
Cone12ag1101 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 135 163 IPR020904 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1101 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1101 Cone-Chr12:8956358 Cone8ag1142 Cone-Chr8:10003237 9.43E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37