Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1102 ATGGAGCGGGCGACTCTGCTTCGTTCTCTGTCATGTTCTTCGCTAGTTTCTAATGGGATCTTCTTACGCTCTTCTGCTCACAGCCTATGCCGCCCGCTCTTGCCTCGCTCTTCTTCTCCTGCGGCGCTCGCTCTAAGAATTCCCCACCGTTCGATTTCTACCATTCTAAGACGCTCACTGCTGCGCCGCCACTGGAGATTACTTCGTTCCTCTTCTTCGTCTTCTTCTTCTTATCCTTCCTCGCTTAGTTTCAGAAAGCACTTCTCCGCCGTCTCCCCGCGAGCTGTGGCTGCTCCCCCTTCTCCGTCAACTCCAGAGTTTTCAACGGTCTCTGATGATGTTGCCGAGAAGCTCGGCTTCGAGAAGGTCGCTGATCAAGTTATCAAAGAGTGTAAATCAAAAGCTGTGCTTTTCAGACATAAGAAGACCGGTGCTGAGGTTATGTCCGTGTCCAACGACGATGAGAATAAGGTGTTTGGCATTGTTTTCCGTACTCCTCCGAATGATTCAACTGGTATTCCACATATTTTGGAGCACAGTGTACTATGTGGCTCAAAAAAGTATCCATTGAAAGAGCCATTCGTTGAACTACTGAAAGGCAGCCTTCACACGTTTTTGAATGCATTCACATATCCTGATCGGACATGTTATCCCGTTGCTTCCACAAATATAAAGGATTTCTACAATTTGGTCGATGTTTACCTGGATGCTGTATTCTTCCCAAAGTGTGTGGAAGATTTCCGGACTTTTCAACAGGAGGGTTGGCATTACGAGCTTAACGATCCTTCAGAAAATATTTCTTACAAAGGTGTTGTTTTCAATGAGATGAAAGGAGTATACTCCCAGCCCGACAATATTTTAGGGCGGACGGCACAACAGGCCCTTTTCCCTGACAATACCTACGGCGTTGACAGTGGAGGTGATCCACAAGTTATTCCAAAGCTGACGTTCGAGGAATTCAGGGAATTTCACCGTAAATATTACCATCCAAGCAATGCTAGAATCTGGTTTTATGGAGATGATGATCCAAATGAGCGCCTCCGCATCTTAAGTGAATATCTGGACACATTTGGTGAAAGTTCATCTCCCAATGAGTCGAAGATTATACCACAAAAATTATTCTCAGAGCCAGTAAGGATTGTTGAGAAATACCCTGCTGGTGAGGGTGGTGATTTGAAGAAAAAGCATATGGTCTGCCTCAATTGGTTGCTATCTGATACGCCTTTGGACTTGGAAACCGAACTTGCCCTTGGGTTCTTGGATCATCTTATGCTGGGAACTCCTGCTTCTCCACTTAGAAAAATCTTGCTGGAAAGTGGTTTGGGAGAAGCCATCATTGGTGGAGGGATTGAAGATGAGCTCTTACAGCCCCAGTTCAGTCTTGGGTTAAAGGGTGTTTCTAATGATGACATTCCCAAGGTAGAAGATTTAATTATCAATACATTGAAGAAGTTAGCAGAGGAAGGTTTTGAAGTGGATGCTGTTGAGGCATCGATGAATACAATTGAGTTTTCTCTACGGGAGAACAACACTGGATCATTTCCTCGTGGTTTGTCACTGATGCTTCGATCCATTGGTAAATGGATATATGATTTGGATCCGTTTGAGCCGTTAAGGTATGAGGAGCCTTTGACGGCCCTAAAAGCCAGAATATCAAAAGAAGGGTCTAAAGTTGTTTTTTCTCCTCTAATAGAGAAATACATCTTGAACAATCCTCATCGAGTAACTGTAGAGATGCAGCCTGACCCAGAGAAAGCTGCTCGTGATGAAGCAGCTGAGAAAGAAATCTTGGACAAAGTTAAAGCAAGTATGACTGAAGAAGATCTTGCTGAGTTAGCACGTGCTACCCAGGAGCTACGACTGAAGCAGGAAACGCCTGATCCACCAGAGGCTCTAAAATGCGTTCCAAGCCTTTGTCTGCAAGATATTCCTAAAGAACCTATTTATATTCCCAAAGAGATCAGCAATATCAATGGAGTGACAGTGTTAGAGCATGACCTTTTCACAAATGACGTCCTTTACACTGAAGTTGTCTTTGATTTGAGTTCGCTAAAACAAGAGCTTATTCCTTTGGTACCTCTATTTTGTCAATCATTGCTAGAGATGGGAACAAAAGATTTGACTTTTGTGCAGCTGAATCAGTTGATTGGAAGGAAAACTGGAGGAATATCTGTTTATCCCTTCACATCATCTGTACGGGGCAAGGAGGATCCGTGTAGTCACATAATTGTCCGAGGCAAGGCTATGGCCGGATGTGCTGATGACCTATTTAACCTGATTAATTGCGTTCTACAAGAAGTACAATTTACAGACCAGCAACGATTTAAGCAGTTTGTTGGCCAGAGCAAAGCAAGAATGGAGAACCGACTTAGAGGTAGTGGTCATGGAATTGCTGCTGCAAGGATGGATGCAAAGCTAAATGTTGCTGGGTGGATCTCAGAGCAAATGGGGGGTGTCAGTTATCTGGAATTCCTACGAACCCTTGAAGAGAAAGTTGATCAAGATTGGGATGGAATTTCTCTGTCTCTTGAGGAGATTAGGCAGTCGTTTCTTTCTAGGGAAGGCTGTCTGGTAAACATGACTGCTGATAGGAAAAATCTCAGCAACTCACAGAAGTTTGTGAGCAAACTTCTTGGTATGCTTCCTAACAAATCTGTCACTAAAGCTAGTGGTTGGAGTGACCGTTTTTCATCAGAGAATGAAGCTATTGTAATTCCAACTCAGGTTAACTATGTAGGAAAAGCAGCTAATTTATACAGTAACGGTTATCAGCTTAATGGAAGTTCATATGTTATTTCAAAGTACATCAGCAATACTTGGTTGTGGGACCGTGTTAGAGTTAGTGGCGGAGCTTATGGAGGATTCTGCGACTTTGATACTCATTCAGGAGTATTCTCCTTCTTATCTTACCGTGATCCCAACCTGTTAAAGACACTTGATGTGTATGATGGAACTGGAGATTTTCTGAGGGAATTGGATATCGATGATGACACTCTTACAAAAGCCATAATTGGAACTATTGGAGATGTTGATTCATACCAGCTTCCAGATGCCAAAGGTTACAACAGTTTGTTGCGGCACTTATTGGGAATTACGGAGGAAGAAAGACAAAGGAGGCGTGAAGAGATACTGTCAACCAGCGTCAAGGATTTCAAAGAATTTGCTGCCGCGGTTGATGCAGTTAAAGACAAAGGGGTTGTGGTTGCAGTAGCATCTCCCGATGACGTCGACTCCGCAAACAAGGAGCGTCCCAACTTCTTTCAAGTCAAGGAGGCCCTCTAA 3282 43.72 MERATLLRSLSCSSLVSNGIFLRSSAHSLCRPLLPRSSSPAALALRIPHRSISTILRRSLLRRHWRLLRSSSSSSSSYPSSLSFRKHFSAVSPRAVAAPPSPSTPEFSTVSDDVAEKLGFEKVADQVIKECKSKAVLFRHKKTGAEVMSVSNDDENKVFGIVFRTPPNDSTGIPHILEHSVLCGSKKYPLKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNIKDFYNLVDVYLDAVFFPKCVEDFRTFQQEGWHYELNDPSENISYKGVVFNEMKGVYSQPDNILGRTAQQALFPDNTYGVDSGGDPQVIPKLTFEEFREFHRKYYHPSNARIWFYGDDDPNERLRILSEYLDTFGESSSPNESKIIPQKLFSEPVRIVEKYPAGEGGDLKKKHMVCLNWLLSDTPLDLETELALGFLDHLMLGTPASPLRKILLESGLGEAIIGGGIEDELLQPQFSLGLKGVSNDDIPKVEDLIINTLKKLAEEGFEVDAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDLDPFEPLRYEEPLTALKARISKEGSKVVFSPLIEKYILNNPHRVTVEMQPDPEKAARDEAAEKEILDKVKASMTEEDLAELARATQELRLKQETPDPPEALKCVPSLCLQDIPKEPIYIPKEISNINGVTVLEHDLFTNDVLYTEVVFDLSSLKQELIPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSVRGKEDPCSHIIVRGKAMAGCADDLFNLINCVLQEVQFTDQQRFKQFVGQSKARMENRLRGSGHGIAAARMDAKLNVAGWISEQMGGVSYLEFLRTLEEKVDQDWDGISLSLEEIRQSFLSREGCLVNMTADRKNLSNSQKFVSKLLGMLPNKSVTKASGWSDRFSSENEAIVIPTQVNYVGKAANLYSNGYQLNGSSYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTGDFLRELDIDDDTLTKAIIGTIGDVDSYQLPDAKGYNSLLRHLLGITEEERQRRREEILSTSVKDFKEFAAAVDAVKDKGVVVAVASPDDVDSANKERPNFFQVKEAL 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8965718 8973193 - Conep12aG0113800.1 Cone12ag1102 449946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1102 1093 Pfam Peptidase M16C associated 579 828 IPR013578 GO:0006508(InterPro)
Cone12ag1102 1093 SMART M16C_assoc_2 579 828 IPR013578 GO:0006508(InterPro)
Cone12ag1102 1093 PANTHER PRESEQUENCE PROTEASE 115 1092 - GO:0004222(PANTHER)|GO:0005739(PANTHER)|GO:0009507(PANTHER)|GO:0016485(PANTHER)
Cone12ag1102 1093 Gene3D - 364 602 - -
Cone12ag1102 1093 Pfam Insulinase (Peptidase family M16) 167 243 IPR011765 -
Cone12ag1102 1093 FunFam Presequence protease, mitochondrial 365 602 - -
Cone12ag1102 1093 SUPERFAMILY LuxS/MPP-like metallohydrolase 119 360 IPR011249 GO:0046872(InterPro)
Cone12ag1102 1093 FunFam presequence protease 1, chloroplastic/mitochondrial 103 362 - -
Cone12ag1102 1093 SUPERFAMILY LuxS/MPP-like metallohydrolase 638 889 IPR011249 GO:0046872(InterPro)
Cone12ag1102 1093 SUPERFAMILY LuxS/MPP-like metallohydrolase 370 636 IPR011249 GO:0046872(InterPro)
Cone12ag1102 1093 Pfam PreP C-terminal domain 900 1072 - -
Cone12ag1102 1093 Gene3D - 100 363 - -
Cone12ag1102 1093 Pfam Peptidase M16 inactive domain 314 500 IPR007863 -
Cone12ag1102 1093 Gene3D - 646 895 - -
Cone12ag1102 1093 FunFam Presequence protease 1 885 1065 - -
Cone12ag1102 1093 Gene3D - 611 1065 - -
Cone12ag1102 1093 SUPERFAMILY LuxS/MPP-like metallohydrolase 900 1074 IPR011249 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1102 K06972 - - csv:101206839 1696.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1102 Cone-Chr12:8965718 Cone8ag1143 Cone-Chr8:10013874 2.01E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g436 . . . . . . . . Cmo19g00631 Cmo11g01352 . . . . Sed10g2040 Cpe04g00272 Cpe15g00496 Bhi05g01130 Tan02g0898 Cmetu01g1020 . Hepe02g0577 . . Cla02g00589 Cam02g0621 Cec02g0620 . Clacu02g0619 Cmu02g0614 . Cone12ag1102 . . . . Csa07g00770 . Cme01g00039 Blo04g00491 . . Bda14g00521 Bpe15g00893 . Bma03g00522 . . . . Cma11g01760 Cma19g00612 . Car19g00465 . . . . . . . . . . . . . . . . Lsi11g01018 . Chy01g00045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34