Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1111 ATGGCGCAAGCACAACCTGATCGTCAGTCCGATGAGAAAATGCTAGAGAAATCGGGATTTACAATGGAGGCGAAAGAATCGAATACTAGCAATAGCTATAATACTAGTAGTAGTAGTAGCAGCAGCAGTACTATGGATAACAACAAGAACAAGAACAGTAGTATTAGTAATTGTAATGCGTTCAGGTTCAATGCTCAGGCGCCTGAATTTGTTCCAAGATCGCATGCGCAGAATCAAATGCCGATCTCGGGTTATTTGTATCCGTGGTTCCCTTTCCTTGGTGGGTCTGGTTCAGATTGGTTCTATGTTGGGGAACAAGAAACTGCTACTTATTTGATCCCTAATACTCCTACTCCTCTCCCCAATTCATCCAAGAATGTCCTGAATGATGATCTTCGTCAAAAGATCATTAAAGAGGCAGAATACTTGTTTTGTGACATGAGTTTGCTTGCAAATGAACATCTGACAAAACACATGAATAAAGACCCTGATGGCTACGTCCCGATATCTGTCATTGCTTCAACCAAAAAAATCAGGTCACTTTTAACTAACTACCAGTTAGTCGCCCAAGTACTGAGGTCCTCTTCAAAGCTTGTGGTAAGTGAAGATGGGAGGAGGGTAAAACGTAAGCACCTGTTCACTGATAGAGAGAGAGAGGAATTGCAATCTCGTACTGTAGCTGTTGAAAACTTGCCTGAAGATCACTCTCATCAAAATCTAGAGAATATATTTAGTGCTGTTGGAAGTGTCAAAACCGTTTGGATATGCAATCCTCAGGAATCCAATTGTTCCCGCTCTAAGACTGAACTTTTCATCAGTAACAAGCTCCACGCACTTGTAGAGTATGGGTCGCAAGAGGTAGCTGAGAGAGCGGTTGAGAAGTTAAATGATGAAAGGGATTGGAGAAAGGGGCTTCGAGTAAGGTTGCTCCTCAGATGCTCGCCAAAATCTGTGTTGAAATGCGGAAAGTCAGAGTTTGATGGCATTTTCGACAACGAAGATTCCCCAACGGCCCTTGAATCCTTTGAGGACTCCTCTTCTCTGCCTCACAAAACAGACATGACTTCTGACAGTAATGCTAAAGAGATCGCTATGGGATCAAAGAAAAAGTGGAACAGAGGACGTGGAAAAGGAAGAGGACGGTCTGAAAACTATAATGGACATGGCTTGCTTTCTTCTCCTTCTCCCCAAACAAGCAGCACAGCAATGCAGTGTGAATCATCTGCCAAACAGAGCTCTAAGGGCCCAAGAATGGCAGACGGGACTAGGGGATTCACCATGGGTAGAGGTAAGCCATTAAGCACCCCTCAAGCCATGGTCAATACAGCTTTTTCAGAGTGA 1341 43.7 MAQAQPDRQSDEKMLEKSGFTMEAKESNTSNSYNTSSSSSSSSTMDNNKNKNSSISNCNAFRFNAQAPEFVPRSHAQNQMPISGYLYPWFPFLGGSGSDWFYVGEQETATYLIPNTPTPLPNSSKNVLNDDLRQKIIKEAEYLFCDMSLLANEHLTKHMNKDPDGYVPISVIASTKKIRSLLTNYQLVAQVLRSSSKLVVSEDGRRVKRKHLFTDREREELQSRTVAVENLPEDHSHQNLENIFSAVGSVKTVWICNPQESNCSRSKTELFISNKLHALVEYGSQEVAERAVEKLNDERDWRKGLRVRLLLRCSPKSVLKCGKSEFDGIFDNEDSPTALESFEDSSSLPHKTDMTSDSNAKEIAMGSKKKWNRGRGKGRGRSENYNGHGLLSSPSPQTSSTAMQCESSAKQSSKGPRMADGTRGFTMGRGKPLSTPQAMVNTAFSE 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8997215 9000102 - Conep12aG0114700.1 Cone12ag1111 449955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1111 446 MobiDBLite consensus disorder prediction 386 415 - -
Cone12ag1111 446 CDD RRM_La_like_plant 224 311 IPR034878 GO:0003723(InterPro)
Cone12ag1111 446 Gene3D - 215 310 IPR012677 -
Cone12ag1111 446 SUPERFAMILY RNA-binding domain, RBD 216 309 IPR035979 GO:0003676(InterPro)
Cone12ag1111 446 SMART rrm1_1 225 308 IPR000504 GO:0003723(InterPro)
Cone12ag1111 446 Pfam RNA recognition motif 227 297 IPR000504 GO:0003723(InterPro)
Cone12ag1111 446 PRINTS Lupus La protein signature 165 180 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone12ag1111 446 PRINTS Lupus La protein signature 139 156 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone12ag1111 446 PRINTS Lupus La protein signature 196 209 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone12ag1111 446 PRINTS Lupus La protein signature 218 234 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone12ag1111 446 ProSiteProfiles La-type HTH domain profile. 126 217 IPR006630 -
Cone12ag1111 446 MobiDBLite consensus disorder prediction 339 362 - -
Cone12ag1111 446 MobiDBLite consensus disorder prediction 1 51 - -
Cone12ag1111 446 SUPERFAMILY Winged helix DNA-binding domain 128 211 IPR036390 -
Cone12ag1111 446 PANTHER LUPUS LA PROTEIN-RELATED 25 430 IPR045180 GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005844(PANTHER)
Cone12ag1111 446 MobiDBLite consensus disorder prediction 22 51 - -
Cone12ag1111 446 Gene3D - 121 214 IPR036388 -
Cone12ag1111 446 Pfam La domain 136 194 IPR006630 -
Cone12ag1111 446 SMART la 130 210 IPR006630 -
Cone12ag1111 446 MobiDBLite consensus disorder prediction 337 446 - -
Cone12ag1111 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 312 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1111 K15191 - - rcu:8283270 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0906 Cone-Chr12:7994717 Cone12ag1111 Cone-Chr12:8997215 7.69E-51 dispersed
Cone12ag1111 Cone-Chr12:8997215 Cone8ag0936 Cone-Chr8:8987742 1.14E-73 dispersed
Cone12ag1111 Cone-Chr12:8997215 Cone8ag1153 Cone-Chr8:10043296 6.63E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35