Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1118 ATGGGAGAAGTAGATCCAACATTCTTCCAAGACCCAGAACACAGACCCAATCTATCCATCACAGAAGCCCAAGGAATCCCATTGATTGATCTCTCTCCCTTCCACGACATTTCTTCTGCAGATTCTAGCAAGCTTGAAGAGCTTGTTAAACAGATAGGGGATGCTTGTAAGGACTGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCATTAGAAAAGAGAGAGAAGATTGAGAAGGCAAGTAGGGAGTTCTTCTCTCAAAGCTTGGAGGAGAAGAGGAAGATAAGAAGGGATGAAAGTCAGGTTTCTGGGTATTATGATACTGAGCATACTAAGAATGTTAGGGATTGGAAAGAAGTGTTTGATTTCACTATCCTCGATCCGACTATTATTCCTGCCTCGCCCGATCCTGACGATGAGGAAGTCATTCAATGGACCAATAAATGGCCTCAATACCCTCCTCAACTAAGGGAGGCTTCTGAAGAATATGCCAAGGAAGTGGAAAACTTAGCTCACAAGTTGATGGAGCTTATTGCATTGAGCTTGGACTTGCCTGCAAAGAGCTTTTCGGGCTACTTCAAAGACCATACGAGCTTTATTCGGTTCAATCACTATCCTCCATGCCCCGTGCCCCACCTAGCTCTTGGCGTCGGCCGACACAAGGACGGTGGGGCCTTGACTGTTTTGGCTCAAGATGACGTCGGAGGATTGGAAGTCAAGAACAAAGCAAATGGAGAATGGGTTCGAGTAAAGCCCACTCCCAATGCTTATATTATCAATGTTGGAGACATTATTCAGGTCTGGAGCAATGACAAGTACGAGAGCGTCGAACATAGGGCGATGGTGAATTCCGAGAAGGAGAGGTTTTCGATCCCCTTTTTCTTGAACCCGGCACATTATACCTTGGTGAAGCCATTGGAAGAGCTTACAAATGAGCAAAACCCTCCAAAATATAGGCCTTATAGTTGGGGCAAGTTCATAACTCATAGAAAGAGGAGCAATTTCAAGAAACTTAATGCTGAAAATATCCAGATCTACCATTTCAGGACCAACGACTCTGTTGCCCAGTAA 1071 44.91 MGEVDPTFFQDPEHRPNLSITEAQGIPLIDLSPFHDISSADSSKLEELVKQIGDACKDWGFFQVINHGVPLEKREKIEKASREFFSQSLEEKRKIRRDESQVSGYYDTEHTKNVRDWKEVFDFTILDPTIIPASPDPDDEEVIQWTNKWPQYPPQLREASEEYAKEVENLAHKLMELIALSLDLPAKSFSGYFKDHTSFIRFNHYPPCPVPHLALGVGRHKDGGALTVLAQDDVGGLEVKNKANGEWVRVKPTPNAYIINVGDIIQVWSNDKYESVEHRAMVNSEKERFSIPFFLNPAHYTLVKPLEELTNEQNPPKYRPYSWGKFITHRKRSNFKKLNAENIQIYHFRTNDSVAQ 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9038465 9040140 - Conep12aG0115400.1 Cone12ag1118 449962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1118 356 Gene3D - 1 337 IPR027443 -
Cone12ag1118 356 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 4 330 - -
Cone12ag1118 356 Pfam 2OG-Fe(II) oxygenase superfamily 198 297 IPR044861 -
Cone12ag1118 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 151 IPR026992 -
Cone12ag1118 356 PRINTS Isopenicillin N synthase signature 220 241 - -
Cone12ag1118 356 PRINTS Isopenicillin N synthase signature 285 303 - -
Cone12ag1118 356 PRINTS Isopenicillin N synthase signature 52 69 - -
Cone12ag1118 356 FunFam Gibberellin 20 oxidase 1 1 336 - -
Cone12ag1118 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 297 IPR005123 -
Cone12ag1118 356 SUPERFAMILY Clavaminate synthase-like 3 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1118 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1118 Cone-Chr12:9038465 Cone8ag1163 Cone-Chr8:10074457 8.97E-164 dispersed
Cone9ag0658 Cone-Chr9:3134032 Cone12ag1118 Cone-Chr12:9038465 3.00E-35 dispersed
Cone10ag0948 Cone-Chr10:5009895 Cone12ag1118 Cone-Chr12:9038465 8.48E-43 wgd
Cone12ag1118 Cone-Chr12:9038465 Cone17ag0821 Cone-Chr17:6559292 1.46E-45 wgd
Cone12ag1118 Cone-Chr12:9038465 Cone8ag1162 Cone-Chr8:10072726 4.55E-211 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g479 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1118 . . . . Csa07g00791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84