Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1121 ATGCCGCGTTCTCATTTCTACAAACTCATTCTGTCGTCAACTCTCCGGGCCAAACAATTGAGAATTCCAGAAAACTTCCTCAGGAAAATCAGGGATGAGCTCTCTACAGTTGCTACACTTTTAGTTCCTGATGGTCATGTTTGGCGTATAGGATTGAAGAAAGCTGATAACAAGTTTTGGCTTCAAGATGGTTGGCAGGAATTTATTGACCATTACTCCATCCGTGTGGGGTATTTCTTACTGTTCAGATACGAAGGGAAATCAAATTTCAATGTTTACATTTATAACTTGAAAACGTCTGAAATAGACTATCAATCCACTACTCTTGGAGGGACTCAGAGGACCACCTATGCGAATCAAAGTGCTATATTCGAAGAGTTAGAAGATGATGACTCGGCTTCTGACTCTTTAAAAGACACGGTTTTTCAAGAAGTTGTAGATAAACAGAAATCCTCCAAAGTTTCTATTCCTTTTTCACAAAATTTATTCAATGGATCTTCTACAAATAAGAAGAGCATGAATTGGACTGATGAAGAGGACCCTGATTCACCAAAGCATGCTGATAATTCACAAACTGAACTTCAGCCTAAAAGAAGGGGTAGAAAAAAGCAGAAAACTGATTCTAATGAGCATGGTCCATCCACCAAAAAAGAAGGGCAAGTAACAATGCGCATTAGATTTTATGAGAGTGCTTCTATCAGGAAGAGACCAGTGACCACAGAAGAAAGAGATAGTGCCATTAATTCAGCCAAAGCTTTTAATCCCATTAATCCTTTCTGCAGGGTTGTCTTACGGCCTTCCTATCTGTACAAAGGCTGTATAATGTATCTTCCATCCTGCTTTGCAGAGAAGAGTTTATGTGGGGTTTCTGGATTCATCAAGCTTCAGATTTGGGACGGAAGACAGTGGCCTGTTAGATGCTTGTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGATGGTACGAATTCTCATCAGAGAATAATTTGGAAGAAGGAGATGTTTGTGTCTTTGAGCTGATCAAGGGAAAAGAAATTACTCTAAAAGTGACCATTTTCCGGGTTGTTGAAGATGTTAAACTCATGACCCCACCACCTACAACGTGGCCGAAAAGCTTGAGCAGAGTAAACTAG 1131 40.23 MPRSHFYKLILSSTLRAKQLRIPENFLRKIRDELSTVATLLVPDGHVWRIGLKKADNKFWLQDGWQEFIDHYSIRVGYFLLFRYEGKSNFNVYIYNLKTSEIDYQSTTLGGTQRTTYANQSAIFEELEDDDSASDSLKDTVFQEVVDKQKSSKVSIPFSQNLFNGSSTNKKSMNWTDEEDPDSPKHADNSQTELQPKRRGRKKQKTDSNEHGPSTKKEGQVTMRIRFYESASIRKRPVTTEERDSAINSAKAFNPINPFCRVVLRPSYLYKGCIMYLPSCFAEKSLCGVSGFIKLQIWDGRQWPVRCLYRGGRAKLSQGWYEFSSENNLEEGDVCVFELIKGKEITLKVTIFRVVEDVKLMTPPPTTWPKSLSRVN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9050836 9053503 + Conep12aG0115700.1 Cone12ag1121 449965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1121 376 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 Gene3D - 1 98 IPR015300 -
Cone12ag1121 376 MobiDBLite consensus disorder prediction 173 197 - -
Cone12ag1121 376 MobiDBLite consensus disorder prediction 165 221 - -
Cone12ag1121 376 PANTHER B3 DOMAIN-CONTAINING 4 343 IPR050655 -
Cone12ag1121 376 ProSiteProfiles B3 DNA-binding domain profile. 260 355 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 Pfam B3 DNA binding domain 262 354 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 Pfam B3 DNA binding domain 10 95 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Cone12ag1121 376 SUPERFAMILY DNA-binding pseudobarrel domain 253 353 IPR015300 -
Cone12ag1121 376 CDD B3_DNA 5 96 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 SMART B3_2 260 355 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 CDD B3_DNA 258 353 IPR003340 GO:0003677(InterPro)
Cone12ag1121 376 Gene3D - 237 358 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1121 Cone-Chr12:9050836 Cone3ag1122 Cone-Chr3:29806884 1.08E-54 dispersed
Cone10ag1130 Cone-Chr10:8141996 Cone12ag1121 Cone-Chr12:9050836 3.69E-135 wgd
Cone12ag1121 Cone-Chr12:9050836 Cone3ag1121 Cone-Chr3:29791630 1.06E-129 wgd
Cone12ag1121 Cone-Chr12:9050836 Cone8ag1166 Cone-Chr8:10086216 5.46E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44503 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1121 - - - 0.0