Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1124 ATGGCTGGGTTTCTGAGAATGTTTTTGAGTTCCGATCAGCCTTCTAATGGTAAAGACGATGAAGGTTATAGCATGGAGTATTCTTTTGCGGTCGAGTATGTAGGCCCGGCGATCCATTACGCTATCCCGCAAGTTGTTCCGGTCGATATAGATCGAGTCCCTACGGCTTCTGCTGTGGCCTCGGCCGCACAGTTTAATTGTTACTCGTTGCCGATTAGTCAACCGATTGTTAAGAAATCGAAGAGGGAGAAGACGATTTCAGGTTCTAAAGTAGAAGTTTCTTCGGGTTCAATAGCGCCTGAGGATTATTATTTTTCTAATTGCGATGAGAATACGACTTCGTTAGGATTTTCTGATGGTAGTGATACGTGCGTAGCACCTAAGGCGTTTGATGAAAAACCTGAGAAGGTATCGAGAGGATGGAAGAAGAAGGAGGAGGAGGAGGAGTTCAATTTACCTGAAGATGGAGATGACAAGATAAGATTTCAAGCGGGTTTGAATCTGACCAGTTATGGGTCAGCTAAGTCTAGTTTGAGTTCGTCTTCTGTGATTTCATCTCCTAAAGAAGGAGAAATTGAAATAATATGTGAATGGTTGCAGCCTCGTCATGTTAAGGGGCCGTCGGTTACTTTTCTTGATCCTGAGACAACTGAGACAGTCTCTGATGAAAAAGATTCTCAATCCGAGGCTGAAAGTTATCAATGGAAGCCTAAGGCTAGGATTTTAAGGACGGGAAAGAAAGGGTCATGTTATAGGTGCCTTAAAGGGAATAAGTTTACTGAGAAGGAGGTATGTATTGTCTGTAGAGCAAGATACTGTTGCAAATGCATGCTTAAAGCCATGGGATCGATGCCGGAAGGAAGGAAATGTGTTGTTTGTATTGGTTATAGGATCGATGAGTCAAAGCGCGATAGTTTAGGGAAGTGTTCTAGAATGCTTAAGAGAATGCTCACTGAGTTTCAAGTTAGAGAGATAATGGCATCTGAGATAGAGAGTGAAGCAAATCAGATTGCATCAACTCTTGTTATTGTCAATGAAGTGCCCCTCACTCATGCAGAGTTAATTGCATTGCGGAGTTGCTCAAACCCACCTAAAAATCTAACGCCAGGTTGCTACTGGTATGATAAAACTGCTGGCTTTTGGGGAAAGGACGGAAGAGAACCACATCAGATTATTAGCCCTCGATTGGATGTTGGGGGGTGCATCAGAGGAAATGCTAGCAATGGAAAGACAGATGTGTGGATAAACGAACGGGTGATCACGAAAAAAGAACTCTTCATGCTCAAGGTGGCTGGAGTACCATGTGTTGGACGTCCTCACTATTGGGTAAGTGCAGATGGATCTTATTCGGAAGAGGGAATGAACCATAAAAAGGGAAAAATATGGGCCAAGACTAAAACAAAGATATTTTGTGCTGCTTTGTCTTTGCCAACTCCTCCCGAATCGGCAAACTTTGATGACGAAGAAGTGAAGAATGTTATCCCAGAACTCACTGAGCAGAAAATGCTTTGGAAAATTCTTCTTGTTGGTCATGATAAGTCGGGAACAAGTACTATATTTAAACAGGTCATGCTTCTCTATAATGTTCCTTTCTCTGAAGAAGAACGTCAAAATATCAAGTACATGATTCAGAGAAACTTGTATGGCTATCTTGGGATACTACTTGAGGGACGTCAAAGATTTGAAGAAGAGACTTTAATTAACAAGAGGAAAAGAGATTTAATTTGTCAGTCTGGACCTTCAGGGAACAGAGAGCAGATCAATGATAGGTCAATGTATTGCATTAGCCCGAAACTGAAAGCTTTCTCAGATTGGCTCCTTAACATCATGGTTTCGGGTAATCTAGAATCCATATTTCAAGCCGCAACTTGTATATATGCGCCACTTGTTGAAGAGCTATGGAAAGATGCAGCCATTCAAGCTACATACGACCGGAAAAATGAATTAGAAATGCTTCCCAGAGTCGCTACTTATTTCCTAGATAGGGCTGTGGAAATTTCAAGGACAGATTATGAGCCATCTGACAATGACATCTTATATGCCGAAGGAATTTCCTCGTACAACAGCCTTAGTTGCACGGAATTCTCATTCCCCAAAAGACCACAAGATAGCCTTCTCGAAGATACTCCTTATAGTCACGATCCTTCTATGAGGTACCAACTCATTAGAGTTCATTCAAGTAGCCTGGGAGAAAACTGCAAGTGGGTAGAAATGTTTGAAGATGTAGATATCATCCTATTTTCCGTTGCATTAACTGATTACGAGGAGTTTTCTGAAGACCATAATGGAGTTGTAAGAAACAAGATGGTCTTAGCCAAACAGCTTTTCGAAAGGATCGTTACCCATCCACGCCTCTGCAAGAAAAATTTCCTTTTGATACTAAACAAGTTTGACCTATTCGACGAAGAGACGAACCGGGTGCCTCTTAATCGATGTGAATGGTTTCAAGACTTCAATCCTGTGATCGCTCTAAATACAGGCAGTAGCAGTAGTAGTACTCGCACTAATCCTTCATCCCTAAGGGCTTGTCAGTATATTGCAGCAAAGTTCAGGGAAGTATTCAATTCTTGTGGTAAGAATAACAAGTTATTTGTCTCCATAGTTACCGGTTTGGAGCAGGAAAGTGTTGATGAAGCTCTGAGATATGCAAGGGAGGTTATGAAGTGGCATAAGGAGGAACTCAGCTTGATTTCTGAGGTATCAAGTACTAGCGTTGAAGAAGCAACCTCAACAACTTAA 2739 41.73 MAGFLRMFLSSDQPSNGKDDEGYSMEYSFAVEYVGPAIHYAIPQVVPVDIDRVPTASAVASAAQFNCYSLPISQPIVKKSKREKTISGSKVEVSSGSIAPEDYYFSNCDENTTSLGFSDGSDTCVAPKAFDEKPEKVSRGWKKKEEEEEFNLPEDGDDKIRFQAGLNLTSYGSAKSSLSSSSVISSPKEGEIEIICEWLQPRHVKGPSVTFLDPETTETVSDEKDSQSEAESYQWKPKARILRTGKKGSCYRCLKGNKFTEKEVCIVCRARYCCKCMLKAMGSMPEGRKCVVCIGYRIDESKRDSLGKCSRMLKRMLTEFQVREIMASEIESEANQIASTLVIVNEVPLTHAELIALRSCSNPPKNLTPGCYWYDKTAGFWGKDGREPHQIISPRLDVGGCIRGNASNGKTDVWINERVITKKELFMLKVAGVPCVGRPHYWVSADGSYSEEGMNHKKGKIWAKTKTKIFCAALSLPTPPESANFDDEEVKNVIPELTEQKMLWKILLVGHDKSGTSTIFKQVMLLYNVPFSEEERQNIKYMIQRNLYGYLGILLEGRQRFEEETLINKRKRDLICQSGPSGNREQINDRSMYCISPKLKAFSDWLLNIMVSGNLESIFQAATCIYAPLVEELWKDAAIQATYDRKNELEMLPRVATYFLDRAVEISRTDYEPSDNDILYAEGISSYNSLSCTEFSFPKRPQDSLLEDTPYSHDPSMRYQLIRVHSSSLGENCKWVEMFEDVDIILFSVALTDYEEFSEDHNGVVRNKMVLAKQLFERIVTHPRLCKKNFLLILNKFDLFDEETNRVPLNRCEWFQDFNPVIALNTGSSSSSTRTNPSSLRACQYIAAKFREVFNSCGKNNKLFVSIVTGLEQESVDEALRYAREVMKWHKEELSLISEVSSTSVEEATSTT 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9058873 9062519 - Conep12aG0116000.1 Cone12ag1124 449968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1124 912 PANTHER OS01G0977800 PROTEIN 13 478 IPR053057 -
Cone12ag1124 912 MobiDBLite consensus disorder prediction 137 156 - -
Cone12ag1124 912 FunFam Extra-large guanine nucleotide-binding protein 3 532 682 - -
Cone12ag1124 912 Gene3D - 696 896 IPR027417 -
Cone12ag1124 912 PRINTS Alpha G protein (transducin) signature 790 799 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 PRINTS Alpha G protein (transducin) signature 505 520 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 PRINTS Alpha G protein (transducin) signature 742 770 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 MobiDBLite consensus disorder prediction 217 231 - -
Cone12ag1124 912 Pfam G-protein alpha subunit 500 886 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 MobiDBLite consensus disorder prediction 209 232 - -
Cone12ag1124 912 Gene3D - 532 682 IPR011025 GO:0007165(InterPro)
Cone12ag1124 912 ProSiteProfiles G-alpha domain profile. 502 900 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 SMART galpha_1 485 896 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag1124 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 891 IPR027417 -
Cone12ag1124 912 SUPERFAMILY Transducin (alpha subunit), insertion domain 531 681 IPR011025 GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1124 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1124 Cone-Chr12:9058873 Cone9ag1298 Cone-Chr9:9750039 1.43E-266 dispersed
Cone12ag1124 Cone-Chr12:9058873 Cone6ag1369 Cone-Chr6:10971858 5.37E-174 wgd
Cone12ag1124 Cone-Chr12:9058873 Cone8ag1168 Cone-Chr8:10093889 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42