Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1145 ATGCCTTCTTTTTTCAATGGGAAGTCTGAAACTCGCAATCCTGATATGTACATGGAGATACGTAATTGGATTGTGCAGAAATTCCATGCAGATCCAAATTCACAGATTGAAGTAAAAGATATATCAGAACTTGAAGTTGGAGATATGGATGCAAGACAGGAGGTGATGGAGTTTTTAGACCACTGGGGTTTAATCAATTTTCACCCATTCCCACCCACTGGTTCGATTTCTGAACCTGCCCCGGCCCCCGCCCTTAATGATGATGGGGCAGGAAAGACAGATTCTTTGGTTGAAAAGTTGTATCATTTTGAAACATTACAGTCCAATCCAACCACCATTGCAAAGAGTCATGTAGCAACACTGGCTATGCCATCTGGTCTTTTTCCAGAATCCACCATATTGGAAGAGTTGGTGAGGCCAGGGGGGCCATCTGTTGAGTACCATTGTAACTCTTGTTCAGCAGATTGTTCTCGGAAACGCTACCATTGCCAGAAGCAGGCTGATTTTGATTTATGTACAGACTGCTTTAACAACGGAAAATTTGATTCCGATATGTCGTCATCAGATTTTATTCTCATGGAGCCTGCTGAGGCTCCTGGTGTTAGTGGGGGAAAGTGGACTGATCAAGAGACCCTTCTTCTTCTCGAAGCATTAGAGCTTTATAAAGAAAACTGGAATGAGATTGCAGAGCATGTTGCCACAAAAACAAAAGCTCAGTGTATTTTGCACTTTGTTCAAATGCCAATTGAGGACACATTTCTAGACTGTGATGATGATGATGTTGATGCCAGCTCCAAAGATCCACCTTCAACAGCAAATGAATCATCTGTCCCTCAAGATGCCACTGAAACAACAGAGACGAAGAATGATGCTAAGGAGAGTCAATCTATGATTTCCCCAGTGGAAGCTTCCAATAAAGAAGATAATGTTGAAGTAAAAGCTGGCAAGCAAAATTCAAAACCAGAAGAGGTGAGTGCAGTGAAAAATGATGAAGAAAAATCAGCACCAGAAGATAGTGGTCAAGAGATTAGTGAGGGCATTGCCCTGAAGACTTTAATTGAAGCATTTGAAGCCATTGGTTATTCTCCAACACCGGATAATCCACTTTCATTTGCTGAAGTGGGGAACCCTGTCATGGCATTGGCGGCATTCTTGTCACGATTAATAGGACCTGATGTTGCTAGTGCGTCCGCTCATAGTTCTCTAAAAGCCATAAATAGTAATTCCCCTGCCATAGAGCTGGCTACAAGGCACTGCTTCCTTTTGGAAGATCCACCAAATGAAAAGGAGGAAATAACTAATTCGGAGAGTGTTGTTGCTGGAAGTGTTGACGGGGATGGTCAAAAAGATGAAAAACAAGAGCATGCAAATAAGGAAGAGTACGACGACGATGAGAAAAAGGATATAGATTCTGCTTCTGATGAAAAGATGGATGCAATTTCTGAGAAAGGTGATTCCATAGAAAAATCAACTTCTGAAAAAGTAGAAGATGCCATTACTCATCAGGAAGTTGGACCCAACAATAAAGATCCAAGCAATTCAGAATTATCTAAGGATAACAGACCAGTTATTCAGGAGGAATCAAGCGATTTAAAGTCCAAAGTGGAAATCACATTAACTTCAACATTGAACATTGGGGAAAAAACTTGTGATGGAGATCCTTCTCAACCAGCAGAAACACCAAAAGATGTAGATATGTCAGACGCTCAGCTCTCAGAGAAAAATGAACCGGAGGATGCAGTTACATCGAAATGTGCAGAGGTGTCCCTTTCAACCGAGGTTTCGAATGATATGTTAGGAAAGGATGAGCCTAAAATATTAGATGTAGCCAGTTCGGTAGGAGAGGTCTCTCAAATAACTAAGGAACCAAGGGAGATAGACATGGTGTCCGATCCTCAGGCAGAAAAGACTGAGCAATTGCACCCAGATACATCGAAGCCTACCGTGGACAATACTGCTAGTACAGATCCTTCTGCTCCTCTGCCTTCAGGAAGGAATGAGTCTTCCCAACCAGTTGTATCAGACTCAGTGGTTGGAAGTGTAGCGGGTGGGGATCAAAATCAAGAAGGTAAAGAAGAGGATCTTAACTGTAGTGAAAAAAAGGTGAAAAAAATTGATAGATTAAAGCGTGCTGCAGTTACTGCACTCACAGCAGCAACGGTGAAGGCAAAAGTTCTAGCCGATCAAGAAGAACATCAAATCCGGATACTTTCTATGGTACTAATAGAAAATCTGCTGCATAAGTTGGAAGCCAAGTTGGCCTTTTTCAACGAAATGGATAATGCAATACTGAGACTGAGGGAACAATTGGACCGAACAAAGCAGAGGCTCTACCAGGAACGAGCACAGATAATAGCTGCCCGGCTTGGTATCCCTGCATCTTCTTCTAGAGGAGGGAAGCCTCAATCATTACCTACTAACAGGATCGTCATGAACTTAGCAGCCAACTCAGTTCCAAGACCTCCAATGAGCATGGCTCCTTCCCAAAGGCCACCAACAATTGTTAGACCCGTGATGGGTCCAGTCGGTCCCGCTACTAACAACTCATTTCCATCCACTACTATTGCAGGAAGTCAATTTCGCCCCTCTGTTCAGGACAAGCTCTCATCTGTTGGGACCAAGTAG 2625 42.9 MPSFFNGKSETRNPDMYMEIRNWIVQKFHADPNSQIEVKDISELEVGDMDARQEVMEFLDHWGLINFHPFPPTGSISEPAPAPALNDDGAGKTDSLVEKLYHFETLQSNPTTIAKSHVATLAMPSGLFPESTILEELVRPGGPSVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFDSDMSSSDFILMEPAEAPGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDTFLDCDDDDVDASSKDPPSTANESSVPQDATETTETKNDAKESQSMISPVEASNKEDNVEVKAGKQNSKPEEVSAVKNDEEKSAPEDSGQEISEGIALKTLIEAFEAIGYSPTPDNPLSFAEVGNPVMALAAFLSRLIGPDVASASAHSSLKAINSNSPAIELATRHCFLLEDPPNEKEEITNSESVVAGSVDGDGQKDEKQEHANKEEYDDDEKKDIDSASDEKMDAISEKGDSIEKSTSEKVEDAITHQEVGPNNKDPSNSELSKDNRPVIQEESSDLKSKVEITLTSTLNIGEKTCDGDPSQPAETPKDVDMSDAQLSEKNEPEDAVTSKCAEVSLSTEVSNDMLGKDEPKILDVASSVGEVSQITKEPREIDMVSDPQAEKTEQLHPDTSKPTVDNTASTDPSAPLPSGRNESSQPVVSDSVVGSVAGGDQNQEGKEEDLNCSEKKVKKIDRLKRAAVTALTAATVKAKVLADQEEHQIRILSMVLIENLLHKLEAKLAFFNEMDNAILRLREQLDRTKQRLYQERAQIIAARLGIPASSSRGGKPQSLPTNRIVMNLAANSVPRPPMSMAPSQRPPTIVRPVMGPVGPATNNSFPSTTIAGSQFRPSVQDKLSSVGTK 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9156142 9160920 + Conep12aG0118100.1 Cone12ag1145 449989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1145 874 ProSiteProfiles Myb-like domain profile. 198 248 IPR001005 -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 514 533 - -
Cone12ag1145 874 SMART zz_5 143 187 IPR000433 GO:0008270(InterPro)
Cone12ag1145 874 MobiDBLite consensus disorder prediction 426 588 - -
Cone12ag1145 874 SUPERFAMILY RING/U-box 145 207 - -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 611 696 - -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 836 874 - -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 256 343 - -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 644 683 - -
Cone12ag1145 874 ProSitePatterns Zinc finger ZZ-type signature. 149 175 IPR000433 GO:0008270(InterPro)
Cone12ag1145 874 CDD SANT 222 247 IPR001005 -
Cone12ag1145 874 ProSiteProfiles SWIRM domain profile. 1 76 IPR007526 GO:0005515(InterPro)
Cone12ag1145 874 MobiDBLite consensus disorder prediction 306 339 - -
Cone12ag1145 874 SMART sant 202 250 IPR001005 -
Cone12ag1145 874 Pfam Zinc finger, ZZ type 146 181 IPR000433 GO:0008270(InterPro)
Cone12ag1145 874 Pfam SWIRM-associated region 1 714 791 IPR032451 -
Cone12ag1145 874 SUPERFAMILY Homeodomain-like 1 68 IPR009057 -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 266 284 - -
Cone12ag1145 874 Coils Coil 756 783 - -
Cone12ag1145 874 Gene3D - 201 252 - -
Cone12ag1145 874 ProSiteProfiles SANT domain profile. 201 252 IPR017884 -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 845 874 - -
Cone12ag1145 874 CDD ZZ_RSC8 147 191 IPR041984 -
Cone12ag1145 874 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 240 IPR017930 -
Cone12ag1145 874 Pfam Myb-like DNA-binding domain 204 246 IPR001005 -
Cone12ag1145 874 Gene3D - 1 66 IPR036388 -
Cone12ag1145 874 Gene3D - 142 192 IPR043145 -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 566 581 - -
Cone12ag1145 874 PANTHER SWI/SNF COMPLEX-RELATED 557 802 - -
Cone12ag1145 874 FunFam SWI/SNF complex subunit SMARCC2 isoform C 202 252 - -
Cone12ag1145 874 Pfam SWIRM domain 1 67 IPR007526 GO:0005515(InterPro)
Cone12ag1145 874 MobiDBLite consensus disorder prediction 534 549 - -
Cone12ag1145 874 MobiDBLite consensus disorder prediction 620 643 - -
Cone12ag1145 874 ProSiteProfiles Zinc finger ZZ-type profile. 144 198 IPR000433 GO:0008270(InterPro)
Cone12ag1145 874 MobiDBLite consensus disorder prediction 445 500 - -
Cone12ag1145 874 SUPERFAMILY Homeodomain-like 200 254 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1145 K11649 - - mdm:103454251 818.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1145 Cone-Chr12:9156142 Cone20ag0433 Cone-Chr20:2157113 2.05E-41 dispersed
Cone12ag1145 Cone-Chr12:9156142 Cone8ag1193 Cone-Chr8:10187211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36