Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1148 ATGTCAGTTGCTGAGCTGAAGGAGCGCCACTTGGCGACAACCGAGACCGTGAACTCCCTCAGAGAGCGTTTGAAGCAGAAGCGGCTCTCGTTGCTTGATACAGATGTGGCTGGATATGCGAGGTCGCAGGGAAAGCATTCGGTTCGATTTGGAGCTACGGATCTGGTGTGCTGTAGAACTTTGCAGGGCCATTCAGGGAAGTATGTTCCAGATGAGGATGCTCACCTAATTACTAGCTCTGGCGATAAGACATGTGTTTTGTGGGATATTACTACTGGACTCCGAACTTCTGTTTTTGGAGGTGAATTTCAGTCGGGACACAATGCAGATGTATTGAGGAAGTTGGGATACAAACCTTAA 360 48.61 MSVAELKERHLATTETVNSLRERLKQKRLSLLDTDVAGYARSQGKHSVRFGATDLVCCRTLQGHSGKYVPDEDAHLITSSGDKTCVLWDITTGLRTSVFGGEFQSGHNADVLRKLGYKP 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9170193 9172008 - Conep12aG0118400.1 Cone12ag1148 449992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1148 119 Gene3D - 8 113 IPR015943 GO:0005515(InterPro)
Cone12ag1148 119 SUPERFAMILY WD40 repeat-like 54 101 IPR036322 GO:0005515(InterPro)
Cone12ag1148 119 Coils Coil 3 23 - -
Cone12ag1148 119 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 68 112 IPR016346 GO:0005737(PANTHER)|GO:0005834(PANTHER)|GO:0007165(InterPro)|GO:0007186(PANTHER)|GO:0030159(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1148 K04536 - - vvi:100853292 125.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1148 Cone-Chr12:9170193 Cone8ag1196 Cone-Chr8:10201400 9.27E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054419 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1