Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1149 ATGTCGGTTCCTAGAAACCACTCCGGCGAGGTTCAAGATTATAACGATTCTGTTCCTCAGGATCTCGCCTCAAAAACTCCGATATTCAGCTCGAGAATCTACGTACTGATCGGAATCATCGCCGCATTTGTAATCGCAGCTATCTTTCTGATATTTTTCTGCATTCGAACGAGTCGGAGCTCGAGGAAGCGTAAGATTCGCGTGAAGCACAGCTCGGGAACGATTCCGCTTTTCTGTAAAGAGATTTTGGAGAGCAATGATTCGGATCACGCTGAGGATTGCGAGAAAGGGGAGGTCAAAGGTGGAAATACGAGTCCTCAGAAGGAGAACTTTGAGGTTGATATCGGGAATGGAGGAGAAAAGAGAAGCGAAGAGAGTGCTGACGTGTCGGTGGATACGGAGAACATAGGGTGGGGTCGGTGGTATAGCTTGAAAGAGCTAGAAATGGCGACTTGTGGATTCGCCGACGAGAATGTGATCGGAGAAGGTGGTTACGGAATAGTGTACAGAGGCGTCTTTCCGGACGGGCCTGTAGTTGCTGTGAAGAATCTTCTTAACAACAAAGGGCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAAGCCATTGGAAAAGTAAGGCATAAGAACCTGGTGCGTCTTATAGGCTACTGTGCAGAAGGTGCCAAAAGGATGCTTGTCTATGAATTTGTTGATAATGGCAATTTGGAGCAATGGCTGCATGGAAATGTAGGGCCCTTTAGCCCTCTTACGTGGGAAATTCGGATCAAGATAGCCATTGGAACAGCAAAAGGATTATCCTACTTGCATGAAGGATTAGAACCTAAAGTTGTTCACCGTGACATTAAATCCAGCAACATTCTTCTGGATAGAAAATGGAATGCAAAAGTTTCGGACTTTGGACTCGCCAAGCTCTTAGGTTCCGATACAAGCCACGTGACTACTCGTGTTATGGGGACTTTTGGTTATGTCTCCCCTGATTATGCAAGTACCGGCATGCTTAATGAAGGAAGCGATGTGTATAGTTTTGGAGTCTTGCTAATGGAGATCATTACTGGACGAAGCCCTATTGATTATTCAAGACCAGCTGGAGAGATGAACTTGGTTGATTGGTTTAAGGCAATGGTAGCTAATCGCCGAGGTGAAGAGATTGTAGATCCTCTGATTCAGATCCAGCCTTCTTCAAGAGCTTTGAAACGCATATTGCTCGTCTGTCTACGCTGCATAGATTTGGATGCTAGGAAGAGGCCAAAAATGGGGCAAATTGTTCATATGTTAGAGGCAGACGACTTCCCTTTTCGCTCAGAACTTCGAACTGCCCAGAAAGACCCTTATCCTTCGTCCCATTCGGACATGTCGGAGAAAGTTACATATCCATTGAAGCATGCTTGCATGGATGATGCAGAGAGATTTAAGAGATGA 1419 45.6 MSVPRNHSGEVQDYNDSVPQDLASKTPIFSSRIYVLIGIIAAFVIAAIFLIFFCIRTSRSSRKRKIRVKHSSGTIPLFCKEILESNDSDHAEDCEKGEVKGGNTSPQKENFEVDIGNGGEKRSEESADVSVDTENIGWGRWYSLKELEMATCGFADENVIGEGGYGIVYRGVFPDGPVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLIGYCAEGAKRMLVYEFVDNGNLEQWLHGNVGPFSPLTWEIRIKIAIGTAKGLSYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLGSDTSHVTTRVMGTFGYVSPDYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPAGEMNLVDWFKAMVANRRGEEIVDPLIQIQPSSRALKRILLVCLRCIDLDARKRPKMGQIVHMLEADDFPFRSELRTAQKDPYPSSHSDMSEKVTYPLKHACMDDAERFKR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9172547 9174874 - Conep12aG0118600.1 Cone12ag1149 449993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1149 472 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Cone12ag1149 472 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Cone12ag1149 472 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1149 472 Gene3D Phosphorylase Kinase; domain 1 117 229 - -
Cone12ag1149 472 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Cone12ag1149 472 Gene3D Transferase(Phosphotransferase) domain 1 230 438 - -
Cone12ag1149 472 Pfam Protein tyrosine and serine/threonine kinase 158 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1149 472 MobiDBLite consensus disorder prediction 91 127 - -
Cone12ag1149 472 SUPERFAMILY Protein kinase-like (PK-like) 129 426 IPR011009 -
Cone12ag1149 472 CDD STKc_IRAK 160 426 - -
Cone12ag1149 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1149 472 PANTHER OS01G0323000 PROTEIN 18 449 IPR052232 -
Cone12ag1149 472 SMART serkin_6 154 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1149 Cone-Chr12:9172547 Cone7ag1363 Cone-Chr7:9883587 1.03E-175 dispersed
Cone20ag0197 Cone-Chr20:847514 Cone12ag1149 Cone-Chr12:9172547 1.01E-33 dispersed
Cone7ag0165 Cone-Chr7:691471 Cone12ag1149 Cone-Chr12:9172547 1.35E-55 dispersed
Cone10ag1169 Cone-Chr10:8511197 Cone12ag1149 Cone-Chr12:9172547 2.47E-231 wgd
Cone12ag1149 Cone-Chr12:9172547 Cone3ag1161 Cone-Chr3:30254998 4.51E-222 wgd
Cone12ag1149 Cone-Chr12:9172547 Cone6ag1328 Cone-Chr6:10720027 9.66E-59 wgd
Cone12ag1149 Cone-Chr12:9172547 Cone8ag1197 Cone-Chr8:10205338 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81975 PF01344 Kelch_1 2.60E-07 CL0186 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1149 - - - 0.0