Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1152 ATGCTATCTTGCTCCTCCACTTCATCTTCATCCCCTTACCACCATTACCGACCTCTCTCTCTCTTCCACCGCTTGCCTATCTCCACTTTTGTCCACTTTTCCACCACTAAAGCTATCTCCTCCGCCTCTACCTCTTCTATCCACCATAGCAACAATCAGAACGATGAGAACCAACCCACTCCCGCCATTTCCGACACCTACGTACACGACCTTAACTTCCGCAAGCACAACTCCAAATCCACTGCCCTCCTCCTCCACCACCTCTCTCACCCGCATTCACAATCTCCAGAACAAAAACAACTCCCTTCCTTACCCAAAGAAGAGAAACTGAACCTTCTAGAACTTTCCCTCGTCAGGAAGCGCACCCCTCAATTCCCCGGCTCGATCTACGCCCAATCCTCCAGCGATCCTGACGTTGCCTCCTCTCTCCCTCCGCTTCGAACATTGTTCCAGTCCAACGCTAACGACGAACTAGATGAAGATGACCGGAGGCTCATCATGCGCGCGCTTGATATTCGCCGCAAAGTTACGGCGGAGATTTTCAAGGAAGCCATGCGAAAGGGGAAGTTCGGGATCACTTACACCACCAATTTGCTTGGCCGGTTGTCTGATTTCATCGATTTCGTTATGATTCAAGCTGCAGTGAAGAAGCAATCGCCTGAGTTTTCAGAATCGTCGTTCAACCTTCGTGTCAAGACTGTTATTGAAGACTTAAACGTTATCCCCCTTATCAGGTGGTTAAAGCATAACTCGCTATCATACCCACAAATTGGGAAGCTTATCTGCATGTCTAGAGGAAACCTTGATTCTATAAAGCGAATTGCGGAATGGTTAAAGTCTAGTTATGTTAAGGGCGAATTTCTGGGGATTGCTCTCACAAGAGCTGGAGGAAACATATTGGAACGTAGCAATGAAGAGTTAGATAAGATTGTGGACTACTTAGAGAGAAATGGAGTGAGTAGAGAGTGGATGGGTTTTGTCATAAGTAGATGTCCTCAGTTGTTGTCATGTAGCATGGAAGAAGTGAAATCTAGGGTCGAATTCTACTTGGAAATGGGTTTAAATGAAAAGGATTTTGGTACAATGGTTTTCGACTTTCCTAAGGTTCTTGGCTTCTATACCTTGGAAGAAATGAATGAAAAGGTTAATTATTTAAAGGAGTTTGGACTTAGTAGTGAGGAATTGGGAAAATTGCTGGCATTTAGACCACAATTGATGGGTTGTAGCATTGAGGAAAGATGGAAGCCTCTTGTAAAGTACTTGTACTACCATGGGATTTCTCGAGATGGAATGAGAAGAATGCTTAAAATTAAGCCTATGGTTTTCTGTGTTGATTTGGAGATGACCATCGTGCCTAAGGTACAATTCTTTAAAGAGATAGGAGTTACAAATGATGGAATCAGCAACATGCTTGTAAAGTTCCCTCCTTTACTCACTTACAGCCTTTACAAGAAAATCCGCCCCGTGGTAATATTCTTGATTACAAGAGCTGGAGTTCATAAGGAAGATATTGGGAAAGTTATTGCTCTGGGACCTGAGCTTTTAGGCTGCAGCATAGTTCATAAGCTTGAAGTCAATGTTAAATATTTTCTCTCTCTTGGTATAAATCTTCGTCAACTTGGACAAATGCTTGCCGATTTTCCGATGCTTCTTCGTTACAACATAGATATTCTTCGTCCAAAATACCGTTATTTGAGAACCACCATGGTCCGTCCTCTCCAAGATCTCATTGATTTTCCAAGGTTTTTCAGTTATTCTCTGGAAGGACGAATTATTCCCCGGCACAAGATTTTGGTGGATAGTAGGTTAAATTTCAAGTTGCGGTATATGTTAGCGAGCACCGATGAGGAGTTTGAAAAGAGGGTTAGAAATATCGTGGAAAAGCGGAAAAGATTTGAATTGGGTGTTTTAGATGACGAGCTTTCTTCCGTCTCTATGACAAACACTTCTAGCTCTGCTGATGAGATGATACAAGCCGACTATTTTGGGGTAGATGAGTAA 2001 43.13 MLSCSSTSSSSPYHHYRPLSLFHRLPISTFVHFSTTKAISSASTSSIHHSNNQNDENQPTPAISDTYVHDLNFRKHNSKSTALLLHHLSHPHSQSPEQKQLPSLPKEEKLNLLELSLVRKRTPQFPGSIYAQSSSDPDVASSLPPLRTLFQSNANDELDEDDRRLIMRALDIRRKVTAEIFKEAMRKGKFGITYTTNLLGRLSDFIDFVMIQAAVKKQSPEFSESSFNLRVKTVIEDLNVIPLIRWLKHNSLSYPQIGKLICMSRGNLDSIKRIAEWLKSSYVKGEFLGIALTRAGGNILERSNEELDKIVDYLERNGVSREWMGFVISRCPQLLSCSMEEVKSRVEFYLEMGLNEKDFGTMVFDFPKVLGFYTLEEMNEKVNYLKEFGLSSEELGKLLAFRPQLMGCSIEERWKPLVKYLYYHGISRDGMRRMLKIKPMVFCVDLEMTIVPKVQFFKEIGVTNDGISNMLVKFPPLLTYSLYKKIRPVVIFLITRAGVHKEDIGKVIALGPELLGCSIVHKLEVNVKYFLSLGINLRQLGQMLADFPMLLRYNIDILRPKYRYLRTTMVRPLQDLIDFPRFFSYSLEGRIIPRHKILVDSRLNFKLRYMLASTDEEFEKRVRNIVEKRKRFELGVLDDELSSVSMTNTSSSADEMIQADYFGVDE 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9185184 9187743 - Conep12aG0118900.1 Cone12ag1152 449996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1152 666 SMART mt_12 573 604 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 396 427 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 505 536 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 325 355 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 541 572 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 360 391 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 468 500 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 290 320 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 SMART mt_12 432 463 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 Pfam mTERF 269 372 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 Pfam mTERF 311 619 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 FunFam BnaA09g42960D protein 398 629 - -
Cone12ag1152 666 PANTHER CGI-12 PROTEIN-RELATED 242 395 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone12ag1152 666 Gene3D Transcription termination factor 3, mitochondrial 400 632 IPR038538 -
Cone12ag1152 666 MobiDBLite consensus disorder prediction 44 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1152 K15031 - - csv:101220316 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1152 Cone-Chr12:9185184 Cone13ag0951 Cone-Chr13:8154567 1.58E-12 dispersed
Cone12ag1152 Cone-Chr12:9185184 Cone17ag0004 Cone-Chr17:52208 4.93E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44505 PF07714 PK_Tyr_Ser-Thr 5.70E-31 CL0016 Cone TR