Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1155 ATGAACAGAGCATTGCCGGAGATGCTACAGTACTTTTTCAACAACGCCGCTGGAAACTGCGCCGACATGACCGTGTTGGAGAGGCAGAGGGCTCGTATCAAATGCCAGCAAGAGCAACAGCTTCAACAATTACAGAACCAACAAAACGGTAATAGTTTCTTCAACGGGAGTGAGTTTGGAAGCCTATTTTCTCTCCCGAGCTTTCAGGGCTTGATGGGAGAAGTCATCACTGGGCCGGTGAAGCCCAGCTCGGAAAATGGGTGGCCCGAATTGGGCAAGTTTGAGCTGCCTGGAGTTGGGCTTGGTGTTGGGTCTAATTCTGAGACGGTGAATGCTAATGGGTTTGAGCCGAATTCAGCGATTTCTAGAACCTCAAGCTGTCCGCCGGCGGTGGTTGTTATGGTGCCTGAGGTGGCGGCGAAGGGAACGGAGTCGGTCCCGTCGGAGAAGTTGAGCTCTGCAGTTGGAAGAGAGAGCTTCAAGAAGAGAAAGGCTGATAAGATGCAGAACACAAAGGTTGTTTCAGAGGATGATAGCGAGGAGAAGAAGATCAAAGTATGTACAGAGGAAGGAGAATCAAAGATCACGGACCGAAACAGCATAAAAAACAACAGAGAAGCTTCTGGTGAAACATCAAAGGAGAATTCTAAAGCTTCCGAGGTTCAAAAACCGGATTACATTCATGTTAGAGCACGTAGAGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTAAGAAGGGAGAAGATTAGTGAAAGGATGAAGTATTTGCAGGATTTAGTACCAGGTTGTAATAAAATCACAGGCAAAGCTGGAATGCTTGATGAAATTATCAACTACGTTCAATCTCTTCAACGACAAGTAGAGTTCCTTTCCATGAAATTAGCTGCTGTGAACCCAAGACTTGATTTCAATGTTGAAGATCTCTTTTCCAAAGAGGCTTTCCCTGCCTGCACAACCAATTTTCCAGCAGTAGGAATCTCTCCCGAAATGACCAATTCATCTAATTATATCCAGTTCAACCCTTCTGCGCAGCAAATGGTTTCTATTTGTGGTATGGAAATGGGTCTAAATCCTTCTTCTGATCTGGGTCTACGTAGAAGCATCAGTGCTCAGGTTTCTATACCCGAAACATTTCTCGACTCCACCTTCTTCACTCAATTTCAACCCACTTCAGCTTGGGATTCTGATGTTCAAAATCTTGTCAACTCGGTATGTGATCCCAGAAGATCAGCTACAGCCTTTTCTACTTCTCAACCATTTACAGGCTCTATTGAAGCTAGCAACTTAAAGACGGAGATGTGA 1308 45.26 MNRALPEMLQYFFNNAAGNCADMTVLERQRARIKCQQEQQLQQLQNQQNGNSFFNGSEFGSLFSLPSFQGLMGEVITGPVKPSSENGWPELGKFELPGVGLGVGSNSETVNANGFEPNSAISRTSSCPPAVVVMVPEVAAKGTESVPSEKLSSAVGRESFKKRKADKMQNTKVVSEDDSEEKKIKVCTEEGESKITDRNSIKNNREASGETSKENSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVEDLFSKEAFPACTTNFPAVGISPEMTNSSNYIQFNPSAQQMVSICGMEMGLNPSSDLGLRRSISAQVSIPETFLDSTFFTQFQPTSAWDSDVQNLVNSVCDPRRSATAFSTSQPFTGSIEASNLKTEM 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9213888 9216787 + Conep12aG0119300.1 Cone12ag1155 449999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1155 435 Gene3D - 232 306 IPR036638 GO:0046983(InterPro)
Cone12ag1155 435 CDD bHLH_AtBPE_like 225 310 - -
Cone12ag1155 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 139 349 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone12ag1155 435 Pfam Helix-loop-helix DNA-binding domain 239 286 IPR011598 GO:0046983(InterPro)
Cone12ag1155 435 SMART finulus 241 291 IPR011598 GO:0046983(InterPro)
Cone12ag1155 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983(InterPro)
Cone12ag1155 435 MobiDBLite consensus disorder prediction 155 224 - -
Cone12ag1155 435 MobiDBLite consensus disorder prediction 142 224 - -
Cone12ag1155 435 FunFam Basic helix-loop-helix transcription factor 232 304 - -
Cone12ag1155 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 304 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0061 Cone-Chr10:362022 Cone12ag1155 Cone-Chr12:9213888 1.40E-36 dispersed
Cone12ag1155 Cone-Chr12:9213888 Cone9ag0512 Cone-Chr9:2454901 1.61E-52 dispersed
Cone12ag1155 Cone-Chr12:9213888 Cone3ag1165 Cone-Chr3:30320347 4.12E-86 wgd
Cone12ag1155 Cone-Chr12:9213888 Cone6ag0437 Cone-Chr6:2134965 2.03E-23 wgd
Cone12ag1155 Cone-Chr12:9213888 Cone8ag1204 Cone-Chr8:10239336 4.59E-254 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44506 PF00227 Proteasome 2.10E-59 CL0052 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1155 - - - 0.0