Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1158 ATGGGCAAAGGCAAGGTGAAAGGAAAGCATCGTCTCGATAAATACTATCACTTAGCCAAAGATCACGGTTATCGTTCTCGTGCCTCATGGAAACTCCTCCAGCTCGACTCCAAATTCAGCTTCCTCCCCTCTGCTCACTCCGTCCTCGACCTCTGCGCCGCTCCTGGCGGTTGGATGCAGGTCGCTGTCGAACGTGTTCCGGTCGGAAGTCTAGTCGTCGGAGTCGACCTGGTCGCCATTCGCCCAGTCCGCGGTGCAATCGCAATCGAACAGGATATCACAAAGCCAGAATGCAAGGCGAGGATCAAAAGAATTATGTGTGAGAAAGGATGCGCAGCTTTCGATTTGGTCTTGCACGATGGCTCGCCAAATGTTGGCGGGGCCTGGGCGCAAGAGGCTATGAGTCAGAACGCCTTGGTTATTGATTCCATCAAGCTGGCCACTAATCTATTGGCACCAAAGGGCACATTTGTGACAAAATTGTTTGAGAAGGTGGAGGTGGATAAGCCAGCTGCTAGTCGTTCCACCTCTGCAGAAATATATCTGTTGGGTCGTAAGTATTATAAGGCCCTAGCAAAGATTGATCCACGTCTTCTTGATTTTAAGCATCTGTTTCAGGGAAATGTAGAACCTCAGAAAAAGGTTGTGGATGTACTCAGGGGAACAACACAAAAGAGACACCGTGAAGGTTACGAGGACGGAAAAATACTCTCGAGGAAAGTGGCTTCTGCTGCCGATTTCATTTGGTCCGATTCTTCTCCCATTGATATTCTAGGTTCTGTAACTTCCTTGTCATTTGATGATCCAACCTGTTTGTCTATCAAGGACCATGCTTTAACCACAGAAGTGGTAAAGTCTCTTTGCGATGATCTGCGTGTGTTGGGGAAGTCAGATTTTAGGCACCTACTGACGTGGAGGACTCAATTAAGAAAGGCCTTGTCTCCTGACAAGAAAGACAAGTCAACTCCTACCAAGGATGTTGCAGATGAGAATAAGAATGAAGATGACAGAATACTTAATGAAATGGAAGAGCTAACCAATGCCATTGATCAAAAGAAAAAACGAACGAAGAAACTTCTTGCAAAACGACGAGCAAAGGAGAAGGCCAGGAAGGCAACAGGGATGCAAGTTGATGTTATGGAGGATGGTTACATTGATGATGAGTTGTTTTCTCTTTCTGCCATCAAGGGTAAGAAAGGTCTCGTAGCTGTTGATTCCTCAGAACATGATTATGAGAATGGTGACTTGGCGAATGATGGAATCGATGAAACACACGAGGAAACTCAAGAGCAGTTGTCTAGTGATGTCGACTCGAACGAAGAGCGCAGGAGGTATGATGATCAAATGGAGGACTTACTGGATCAGGCTTATGAACGATATATGGATAAAAAGGGTGGAAGTGCAAAGCAACGAAAACGTGCAAAACAATCTTATAGTCAAGAGGCCGAATTGTTGGAGTATGATGCAAATGGTGATATTTCTCAACCGGATTATGATTCCGACAAAGATGAGGCGGATGAGGAAAAAAATCCTCTCATGGTCCTGCTTGATGACATGGATGGTGTAACTCAAGAGGACATTGTAAAAAAGTGGTTCAGTCAGGACATCTTTACTGAAACAGCAGTGGACAGAGAAGTAGCAATGTCTGAAAGCGAAGATGACATGCGAATAGACAAGGCAGAGAAAAAATCTAAAACTCCCATACAAAAAGGACAAGGGAAAGGAGATTGCGAAAGGCGGTATGGAATCTGA 1752 45.26 MGKGKVKGKHRLDKYYHLAKDHGYRSRASWKLLQLDSKFSFLPSAHSVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVAIRPVRGAIAIEQDITKPECKARIKRIMCEKGCAAFDLVLHDGSPNVGGAWAQEAMSQNALVIDSIKLATNLLAPKGTFVTKLFEKVEVDKPAASRSTSAEIYLLGRKYYKALAKIDPRLLDFKHLFQGNVEPQKKVVDVLRGTTQKRHREGYEDGKILSRKVASAADFIWSDSSPIDILGSVTSLSFDDPTCLSIKDHALTTEVVKSLCDDLRVLGKSDFRHLLTWRTQLRKALSPDKKDKSTPTKDVADENKNEDDRILNEMEELTNAIDQKKKRTKKLLAKRRAKEKARKATGMQVDVMEDGYIDDELFSLSAIKGKKGLVAVDSSEHDYENGDLANDGIDETHEETQEQLSSDVDSNEERRRYDDQMEDLLDQAYERYMDKKGGSAKQRKRAKQSYSQEAELLEYDANGDISQPDYDSDKDEADEEKNPLMVLLDDMDGVTQEDIVKKWFSQDIFTETAVDREVAMSESEDDMRIDKAEKKSKTPIQKGQGKGDCERRYGI 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9226188 9229406 - Conep12aG0119700.1 Cone12ag1158 450002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1158 583 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 8 188 IPR015507 GO:0001510(InterPro)|GO:0008168(InterPro)
Cone12ag1158 583 MobiDBLite consensus disorder prediction 425 446 - -
Cone12ag1158 583 Coils Coil 328 362 - -
Cone12ag1158 583 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 8 197 IPR050082 GO:0000463(PANTHER)|GO:0000466(PANTHER)|GO:0001510(PANTHER)|GO:0005730(PANTHER)|GO:0008173(PANTHER)|GO:0008650(PANTHER)|GO:0016435(PANTHER)|GO:0030687(PANTHER)|GO:0031167(PANTHER)
Cone12ag1158 583 Pfam Ribosomal RNA methyltransferase Spb1, DUF3381 223 370 IPR024576 -
Cone12ag1158 583 Pfam FtsJ-like methyltransferase 24 187 IPR002877 GO:0008168(InterPro)|GO:0032259(InterPro)
Cone12ag1158 583 MobiDBLite consensus disorder prediction 485 508 - -
Cone12ag1158 583 MobiDBLite consensus disorder prediction 546 583 - -
Cone12ag1158 583 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 202 IPR029063 -
Cone12ag1158 583 Gene3D Vaccinia Virus protein VP39 21 193 IPR029063 -
Cone12ag1158 583 MobiDBLite consensus disorder prediction 313 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1158 K14857 - - csv:101209556 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1158 Cone-Chr12:9226188 Cone8ag1207 Cone-Chr8:10253429 0 dispersed
Cone12ag1158 Cone-Chr12:9226188 Cone8ag1206 Cone-Chr8:10249035 2.57E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35