Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1160 ATGGCAAGTGATTCCTTGATAATACCTAATGGGAATGTTATGTCTCAGCCCGATGGGAAGTTACCGTGGAGATTACCTTCTGACCTCAAATATTTTAAGGACTTAACTATGACGACATCAGATTCTGGGAAAAAGAATGCAGTTTTGATGGCTAGAAAAACATGGGAGAGTATTCTACTCAAGCATCAGCCTCTACCAGGTCGTCTAAATGTTGTTTTGACTCGTTCTGGGAGCTTTGATATTGCTGCCAAAGAGAATGTGGTAATATGTTCCAAGGAAGCTCTTAATGCGCCTGAATGTGATGCTATTCACATTACAGAAATTCAAACACGTATTGAATGTGATACCCTTATACCTGAAATTGATCGTTCTGTATTTCATACATGGCCCTCATCTTTCCCTCTCGTGGAGAATAATATTCGATTTTCATTCATTACTTATGCTCATATGACCCTTGAGAGGCATGAGGAGAATTTATATTTAAGATTGGTTCAAAAGATTATCTCAGATGGCACTACTAAAAGTGATAGAGCAGGAACTGGAACTTTGTCGAAATTTGGGTGCCAGATGCAGTTCAACCTGCGGAAAACATTTCCACTTCTCACAACTAAGAAAGTATTTTGGCGAGGTGTTGTTGAAGAACTTCTATGGTTTATCAGTGGTTCAACCAACGCTAAGGTCCTTCGGGAGAAAGGCATTCATATATGGGATGGAAAAGTTTCCAGAGACTACCTTGACAGTATTGGCTTGACAGACAGGGAGGAAGGTGACTTAGGGGTCTGTATATGGGTTCCAATGGAAGAGGCACTTCGGTATACTGACATACTTGCTGAGCCTACTGGTCAAGGATTTAATCAGTTATTAGATGTTATTAACAAGATAAAAAATAATCCAGATGACCGACGAATTATACTCTCTGCATGGAATCCTTCTGATCTCAAATCTATGGCACTTCCACCCTGTCACATGTTTGCTCAGTTCTATGTGGCCCACGTAAAGTTGTCCTGTCAAATGTATCAACGATCTGCTGACATGGGCCTGGGTGTGCCGTTTAACATTGCATCTTATGCTCTCCTAACTCGTATGATTGCTCATGTTTGTGATCTTTCTCCAGGTGATTTCGTCCATGTTATAGGGGATGCTCATGTGAAACCATTGCAGGAGCAGCGTCATAAACTGCCCAAGCCTTCCCCAATTCTGAAGATCGATCCTGAGAAGAAGGATATATGTTCTTTTGAGGCAGCTGATTTCAAGCTCCTAGGTTATGATCCTCACCAGAAGATACAAATGAAAATGGCCGTTTAG 1305 41.23 MASDSLIIPNGNVMSQPDGKLPWRLPSDLKYFKDLTMTTSDSGKKNAVLMARKTWESILLKHQPLPGRLNVVLTRSGSFDIAAKENVVICSKEALNAPECDAIHITEIQTRIECDTLIPEIDRSVFHTWPSSFPLVENNIRFSFITYAHMTLERHEENLYLRLVQKIISDGTTKSDRAGTGTLSKFGCQMQFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLREKGIHIWDGKVSRDYLDSIGLTDREEGDLGVCIWVPMEEALRYTDILAEPTGQGFNQLLDVINKIKNNPDDRRIILSAWNPSDLKSMALPPCHMFAQFYVAHVKLSCQMYQRSADMGLGVPFNIASYALLTRMIAHVCDLSPGDFVHVIGDAHVKPLQEQRHKLPKPSPILKIDPEKKDICSFEAADFKLLGYDPHQKIQMKMAV 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9232421 9240808 - Conep12aG0119900.1 Cone12ag1160 450004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1160 434 PIRSF DHFR-TS 12 92 IPR012262 GO:0004146(InterPro)|GO:0004799(InterPro)|GO:0006730(InterPro)
Cone12ag1160 434 PIRSF DHFR-TS 146 434 IPR012262 GO:0004146(InterPro)|GO:0004799(InterPro)|GO:0006730(InterPro)
Cone12ag1160 434 PIRSF DHFR-TS 90 151 IPR012262 GO:0004146(InterPro)|GO:0004799(InterPro)|GO:0006730(InterPro)
Cone12ag1160 434 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 149 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone12ag1160 434 ProSitePatterns Thymidylate synthase active site. 301 329 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 128 434 IPR036926 -
Cone12ag1160 434 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 149 434 IPR036926 -
Cone12ag1160 434 FunFam Thymidylate synthase 157 434 - -
Cone12ag1160 434 Gene3D Dihydrofolate Reductase, subunit A 95 148 IPR024072 -
Cone12ag1160 434 PRINTS Thymidylate synthase family signature 198 219 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 PRINTS Thymidylate synthase family signature 290 309 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 PRINTS Thymidylate synthase family signature 334 360 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 PRINTS Thymidylate synthase family signature 372 389 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 PRINTS Thymidylate synthase family signature 316 331 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 NCBIfam thymidylate synthase 160 434 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 CDD DHFR 18 147 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone12ag1160 434 Pfam Thymidylate synthase 160 434 IPR023451 -
Cone12ag1160 434 Pfam Dihydrofolate reductase 18 92 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone12ag1160 434 Hamap Thymidylate synthase [thyA]. 157 434 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cone12ag1160 434 CDD TS_Pyrimidine_HMase 160 383 IPR023451 -
Cone12ag1160 434 SUPERFAMILY Dihydrofolate reductase-like 18 148 IPR024072 -
Cone12ag1160 434 PANTHER THYMIDYLATE SYNTHASE 1 25 434 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Cone12ag1160 434 Gene3D Dihydrofolate Reductase, subunit A 12 94 IPR024072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1160 K13998 - - mdm:103448418 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0978 Cone-Chr10:6582521 Cone12ag1160 Cone-Chr12:9232421 2.10E-224 dispersed
Cone12ag1160 Cone-Chr12:9232421 Cone17ag1356 Cone-Chr17:9475939 6.31E-36 wgd
Cone12ag1160 Cone-Chr12:9232421 Cone20ag0127 Cone-Chr20:566034 1.39E-43 wgd
Cone12ag1160 Cone-Chr12:9232421 Cone3ag1172 Cone-Chr3:30378634 1.64E-222 wgd
Cone12ag1160 Cone-Chr12:9232421 Cone8ag1209 Cone-Chr8:10262355 1.17E-251 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43