Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1161 ATGTCTGTCACAATTGAAGACGACCTTGATGCCGAGGAATTACAGGCAGTGGATGCTTTCCGTCAAGCGCTCATTCTGGAAGTGCTTCTGCCCTCAAAACACAACGATCCTCATATGATGCTGAGGTTTTTAAGAGCTCGGAAATTCAACATTGAGAAAACAAAGCAAATGTGGACAGACATGCTTCAATGGAGAAGGGAATTTGGGGATGACACTATCATGGAGGATTTCGAATTCAGGGAATTAGATGAAGTCTTAAAGTACTATCCACAAGGACATCATGGGGTCGACAAGGATGGCCGACCGGTTTACATTGAAAGGTTGGGTATGGTGGATTACGGCGGACTGATGCAAGTCACAACAATGGATCGCTATGTGAAATACCATGTCAGGGAGTTTGAGAGGACCTTTGTTATAAAACTCCCTGCCTGTTCACTTGCAGCAAGGAGGCATATTGACCAGAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTTAAGAGCCTGAACAAAGCTGCAAGGGATCTCCTCTCGCAGATTCAGAGAATCGACGGTGATAATTATCCTGAGTCTCTGAACCGCATGTTCATCATCAATGCTGGTTCCGGATTCAGACTTTTGTGGAACAGTGTCAAATCATTCCTTGATCCCAAAACAACAGCAAAAATCAATGTTCTGGGTAACAAATACCAGAGCAAATTGCTTGAGATAATTGATGCTAGTCAGCTGCCAGATTTCCTCGGTGGCAGCTGTACATGTGCTGATAAAGGTGGCTGCATGCGATCAGACAAGGGACCATGGAATGATCCTGACATACTGCAGATGGTTCAAAACGGTGAGGCAAAATGTGCCCGGATAATTTTTTCAGACATGGCTGCTGAAGCAGCTGATATCTCTCCAAGGCACCGGCGGGAGCATTCTGACCATCAGAAACTCGCCCCTGTTCCAGAAGAAGCTGCCATCATAAAAAAGAGCGACACTACCTATAACTATGAAATTTTCAATCCGATAGTACAACACAAGGGTGTGGATTCAAGTTGGGAAAAATCGTTACAAAAGAAAAAATCAATCGTATCTAAAGAATTGGTATCAAGTTATCGTGCGGTCAAGGTTCCTGATGGGGCAGGTAATCAGCTAGTGGGTGGGATAATGGCCTTTGTAGTTGGAATAATGACCATGGTCCGCCTCACCAAAAACATGCCAAAAAAACTTGCTGCTGCTGCTTCAGTTAGCAGTGGTTCGAACCAGGAATGCTACAAAATGATTAAAGGCCCCAAGTCATATCCGGCTTCAGCACTGCCCATCTCCACGGCTGATATCATGACCATGATCAAACGCATGGCGGAGCTGGAACAGAGGATGAATATTCTCTCCCAAACTCCGGCAGCTATGCCTCTAGAGAAAGAGATGTTGTTGAATGTTACTCTAACCAGAGTGGATGCCCTGGAACGATCATTATCAGATACCCAGAAGGCATTGGAGGACTCTCTTGGTCGGCAGGAGGAACTCCTGGCATATATAGAGAGGAAGAAGAATAAGAAAAAGAACAATAAAATGAATCCATTCAATTGGTGA 1575 44.89 MSVTIEDDLDAEELQAVDAFRQALILEVLLPSKHNDPHMMLRFLRARKFNIEKTKQMWTDMLQWRREFGDDTIMEDFEFRELDEVLKYYPQGHHGVDKDGRPVYIERLGMVDYGGLMQVTTMDRYVKYHVREFERTFVIKLPACSLAARRHIDQSTTILDVQGVGLKSLNKAARDLLSQIQRIDGDNYPESLNRMFIINAGSGFRLLWNSVKSFLDPKTTAKINVLGNKYQSKLLEIIDASQLPDFLGGSCTCADKGGCMRSDKGPWNDPDILQMVQNGEAKCARIIFSDMAAEAADISPRHRREHSDHQKLAPVPEEAAIIKKSDTTYNYEIFNPIVQHKGVDSSWEKSLQKKKSIVSKELVSSYRAVKVPDGAGNQLVGGIMAFVVGIMTMVRLTKNMPKKLAAAASVSSGSNQECYKMIKGPKSYPASALPISTADIMTMIKRMAELEQRMNILSQTPAAMPLEKEMLLNVTLTRVDALERSLSDTQKALEDSLGRQEELLAYIERKKNKKKNNKMNPFNW 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9242558 9249660 + Conep12aG0120000.1 Cone12ag1161 450005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1161 524 Coils Coil 440 460 - -
Cone12ag1161 524 SMART CRAL_TRIO_N_2 36 61 IPR011074 -
Cone12ag1161 524 Pfam CRAL/TRIO domain 87 249 IPR001251 -
Cone12ag1161 524 SUPERFAMILY CRAL/TRIO domain 81 277 IPR036865 -
Cone12ag1161 524 Gene3D - 3 68 - -
Cone12ag1161 524 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 4 511 IPR051026 -
Cone12ag1161 524 SMART sec14_4 81 252 IPR001251 -
Cone12ag1161 524 CDD SEC14 82 249 IPR001251 -
Cone12ag1161 524 SUPERFAMILY CRAL/TRIO N-terminal domain 7 77 IPR036273 -
Cone12ag1161 524 Gene3D - 69 281 IPR036865 -
Cone12ag1161 524 FunFam SEC14 cytosolic factor 69 281 - -
Cone12ag1161 524 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 255 IPR001251 -
Cone12ag1161 524 Pfam CRAL/TRIO, N-terminal domain 34 60 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1161 K26544 - - csv:101214906 654.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0980 Cone-Chr10:6604550 Cone12ag1161 Cone-Chr12:9242558 8.78E-202 dispersed
Cone12ag1161 Cone-Chr12:9242558 Cone3ag1175 Cone-Chr3:30402116 6.55E-180 dispersed
Cone12ag1161 Cone-Chr12:9242558 Cone12ag1162 Cone-Chr12:9249953 1.79E-174 tandem
Cone12ag1161 Cone-Chr12:9242558 Cone20ag0126 Cone-Chr20:561561 6.03E-112 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone3ag1174 Cone-Chr3:30397100 3.84E-178 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone4ag1930 Cone-Chr4:13658176 6.98E-160 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone7ag1842 Cone-Chr7:11961413 5.50E-106 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone8ag1210 Cone-Chr8:10270462 0 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone9ag1571 Cone-Chr9:11324351 2.82E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40