Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1163 ATGGACCTTTCTGATGATCTTGTTTCTCAGTCTGCCCCGGGTAGGCGCAAATTTCAACCTAAGGCCAAACCACGTCCTAGAAGAGAAGCTTCTGTGTTAGTTCCTTCAACGTTGCCCAGCGATGCAAAGGAAAGGGCTACTGTATCATCTTCCACATTCTTGGATGACAAACAGTCTGCTGAACCTGTAGATGTCATAGAAAATGCATTGACGAACATATCTGCTCTTGTGGCAGCTACATCAGAGATTGTTTCTGACAACAAACGATCTCAAAATAATGGAACAACAGAAGAGGCCAATACATTCTTGGGTGCTGAACACTCTGTTGAAATTAGAGAGTATAGAGTGCCTGACCCAGTTGGTCTATCTTCAGTTACCTCCACGAATATCGAGGACAAGGAACCATTGATAGAAAATATATGCTCAAGTGTTCAGTTCTCAGATGATGGAAAAATCTTGGGAGCATTAAATCCTTCTCAAACAGTTACTCTTGATGCTCAGGATGTTGGGATTCTTGGTTTTACTGGAAATGGATCAGTCTCTAATGAAAGTGGGGATTGGCATTCTACCTCTGGAAAATCAGTGGTAGAGAATGCAGACATTTTTTCAGGCCTGGAATATCTTGATGATTTGCTTAATCAACCTCCAAGCGGTGGTGCATCTGAAGATCCAGTAAGATGCAATGAAGTTGCAGGTTCCTTTGTTGGGGGCATTCGGATTGATAACACAAGGTTTGATACAGAGGAAGCTGGTGAAGATCCTGTCTTTGATACTTCTAACTTTGAGGCCATCATTGCATCAGGAAGACGTGCTGAAAAGTTTATACCCAAGCCCAGATTAAAAACTGGAATGGAGAAAACTAACAGCGGCAGCACTCACCCAGAAATCTCTATCACACCTCCAACAGACTCAGAGCTCTCCTTCCAACCAGATGACATACTTAATTACTCATCAGTTGGGTTTGATGGTTCAATTCCCATCGACTCAAACACTGAAGTACCAATTAATGAAGAGCCAACAAATGGAGCCGAAACTTCTTGCCCTCAAAGTTCTTTTGCCCAGGATGATATTCATTCAGAGGTTCTGCCACCATTGTCAGCGAAGAGTGGTAAGAGTGGCAGGGAAAAAGCTTCAGAGAGTGAACGTGGCAAATCAACGAGGCTGAGAAAGCGAGAGTCTTGTCAACTTGTTGATGAACCAGAAGATGAAACTAATGTGGAACAGGGTCCCCCTGATGATCCATCCTATAACTCTTACATGGATGATGGACAATACAATGATAATGAAGGCGAGGTGGGAAGAATGCCTGAGAAGAGAAAACTTTCCAGAAAGTCTGGGAAACCTGCAACAGAAAACAAAAAACCCAGTCAGAAACGGAAGGGGTCCAGTGACGAAGCAGGCGTCAAATCTTCTGAAAAACGGCCAAAAAAATTCTCTCATTCAACTCGCCGGAACAAAAGACTGGTGGACAAGACTTTACTTGAAACTCCAGAGGATGAAATTGACTTTGAAAAGATACCTTTCAAGGATCTGATTATTTTCCATGAACATAAGGAGCGACTAGCGAATAAAGAGGCTAAATCTAAAGCATCATTGCCCAGTCAAAGTGCTGAAAATGTTGCTCGTGAGGAAGCCTGTCCTATTGAAGAGGGAACCTTTGATTCTGAACAAGAAGGTTCTGATGATGTTAAAATTGATTCAAGCTCTATTTTCTTCAATTACCAATCGTTCATGAAAAAAGAGCCCCGCGTAAAATGGTCAAAACAGGATACTGAACTTTTGATTGAGGGTGTTAAACAATTCGGGACAAATCTATATATGATACAAATGCTTTTTCCCGGCCGATCACATAAACAAATCAAGTCGAAATTTACTAGCAAGAATCCGCAACTAAGAATGCAACTTAAAGAAGCTATGGAGTGTCGTAGCAAAGATCATTCACTTTTAAAATCCGTTGCTGAGCAGCTGCTTCAGGCCAAAAAAGAGAAGGCCAATGAAGGAGGAGGAGAAGAAGAAAAAGAAGACCTGAATGACAATGGTAGTGAGGGTGTAGAGGCAACAAACCCTGAAATAAATGTTGAATTCGAAAAATCCAGACATGAGAAGGAAGATGGTAAGGAAGAAGCAGATCCTGGTGAAGTTCATAGTCCTTCCAAGAATGAAAGTGCCGACGAGCTCGAAATGTGGAATGAGTACAAGTACGATTATTAG 2211 41.93 MDLSDDLVSQSAPGRRKFQPKAKPRPRREASVLVPSTLPSDAKERATVSSSTFLDDKQSAEPVDVIENALTNISALVAATSEIVSDNKRSQNNGTTEEANTFLGAEHSVEIREYRVPDPVGLSSVTSTNIEDKEPLIENICSSVQFSDDGKILGALNPSQTVTLDAQDVGILGFTGNGSVSNESGDWHSTSGKSVVENADIFSGLEYLDDLLNQPPSGGASEDPVRCNEVAGSFVGGIRIDNTRFDTEEAGEDPVFDTSNFEAIIASGRRAEKFIPKPRLKTGMEKTNSGSTHPEISITPPTDSELSFQPDDILNYSSVGFDGSIPIDSNTEVPINEEPTNGAETSCPQSSFAQDDIHSEVLPPLSAKSGKSGREKASESERGKSTRLRKRESCQLVDEPEDETNVEQGPPDDPSYNSYMDDGQYNDNEGEVGRMPEKRKLSRKSGKPATENKKPSQKRKGSSDEAGVKSSEKRPKKFSHSTRRNKRLVDKTLLETPEDEIDFEKIPFKDLIIFHEHKERLANKEAKSKASLPSQSAENVAREEACPIEEGTFDSEQEGSDDVKIDSSSIFFNYQSFMKKEPRVKWSKQDTELLIEGVKQFGTNLYMIQMLFPGRSHKQIKSKFTSKNPQLRMQLKEAMECRSKDHSLLKSVAEQLLQAKKEKANEGGGEEEKEDLNDNGSEGVEATNPEINVEFEKSRHEKEDGKEEADPGEVHSPSKNESADELEMWNEYKYDY 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9255223 9260295 - Conep12aG0120200.1 Cone12ag1163 450007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1163 736 MobiDBLite consensus disorder prediction 284 310 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 692 736 - -
Cone12ag1163 736 CDD SANT 585 624 IPR001005 -
Cone12ag1163 736 SMART sant 582 630 IPR001005 -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 325 356 - -
Cone12ag1163 736 SUPERFAMILY Homeodomain-like 585 626 IPR009057 -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 372 398 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 275 310 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 427 475 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 523 561 - -
Cone12ag1163 736 Gene3D - 586 665 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 325 491 - -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 42 57 - -
Cone12ag1163 736 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 14 725 - GO:0000126(PANTHER)|GO:0001156(PANTHER)|GO:0070898(PANTHER)
Cone12ag1163 736 MobiDBLite consensus disorder prediction 1 57 - -
Cone12ag1163 736 Pfam Myb DNA-binding like 576 660 IPR039467 -
Cone12ag1163 736 MobiDBLite consensus disorder prediction 659 736 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1163 K15198 - - csv:101216268 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1163 Cone-Chr12:9255223 Cone8ag1212 Cone-Chr8:10279714 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1163 Cone8ag1212 . . . . . . Blo04g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004585 1 4 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44507 PF00657 Lipase_GDSL 1.20E-32 CL0264 Cone TF