Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1167 ATGCCAGCACTATCTTCCCGACTCTCTCAAGCTCCCACCTTCTCCTCCTCCGCCCATTCAATCTCTTCAATCCCCATCAATTCCACCTTCTCGACCTTCCAATCTCGCGCGACAACTCCCTATTTCCCTCCCCTACGTCTTCCTCGCCATCCCGAATTCACCTCCGCAATAATGTCCTCACCATCCGACCTATTCAACGGCGTCGAAAGTACTGATCAGTTGGGGTTTGAGGATCACGATATCGATCTCTTGGCCGAGGTGGCCAACAAGGCCGCTGATGCCGCCGGAGAAGTCATTTGTAGATACTTTAGGAAGAAATTCGAGATTCTTGATAAGGCGGACCTGAGTCCTGTGACCGTTGCTGACCGAGCGGCAGAGGAATCTATGCTTTCGATCTCATTAGACCATTTCCCATCTCATGCTGATTATGGAGAAGAGAATGGGTGGAGATGCAAGGAGAAATCTGCAGACTATGTCTGGGTCTTAGATCTATCGATGGAACAAAGAGGTCTATCACTGGTAACGAAAACCCGTGTTTGGCACTCTCATTGCTCTGTTATACAAAGGCAAACCGATTTTGGGCGTAATCGATCAGCCTATTTTGAAAGAAAGATGGATATGAATAGATGGAAGGCCAACTACATTGAATGGGCAAGAAGTGTCGACACGCTCGTGTTCAAATATATCACGAGCCTATTTGTATGTCTCTCCTATTCCTATGGTACACCACAAGTCCACATCTATTCAGCGGAGATGCAGAAGAGGCATTTGATCGTGTTAGAAGTTAAAGTACCGTTATATGGTTGTGACTGCTATGCCTATGCTCTTTTAGCTTCCGGTTATGTGGATCTTGTAGTCGAATCTGGTCTGAAGCCCTATGATTTTCTTTCACTCGTATCCGTCATAGAGGGTTCCGGAGGTATTCTTACGGATTGGAGAGGAGATAAGATTCATTGGGAAGCTTCTCCAGATTCTCAAGCGAAAAGTTTTAATGTTGTAGCAGCCTAG 1008 46.43 MPALSSRLSQAPTFSSSAHSISSIPINSTFSTFQSRATTPYFPPLRLPRHPEFTSAIMSSPSDLFNGVESTDQLGFEDHDIDLLAEVANKAADAAGEVICRYFRKKFEILDKADLSPVTVADRAAEESMLSISLDHFPSHADYGEENGWRCKEKSADYVWVLDLSMEQRGLSLVTKTRVWHSHCSVIQRQTDFGRNRSAYFERKMDMNRWKANYIEWARSVDTLVFKYITSLFVCLSYSYGTPQVHIYSAEMQKRHLIVLEVKVPLYGCDCYAYALLASGYVDLVVESGLKPYDFLSLVSVIEGSGGILTDWRGDKIHWEASPDSQAKSFNVVAA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9272080 9274132 + Conep12aG0120600.1 Cone12ag1167 450011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1167 335 Pfam Inositol monophosphatase family 83 163 IPR000760 -
Cone12ag1167 335 Pfam Inositol monophosphatase family 253 317 IPR000760 -
Cone12ag1167 335 PANTHER PHOSPHATASE 259 335 IPR051090 GO:0042578(PANTHER)
Cone12ag1167 335 SUPERFAMILY Carbohydrate phosphatase 84 334 - -
Cone12ag1167 335 Gene3D - 231 335 - -
Cone12ag1167 335 Gene3D - 71 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1167 K18649 - - csv:101205614 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1167 Cone-Chr12:9272080 Cone8ag1215 Cone-Chr8:10304042 5.29E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g341 . . . . . . . . . . . Cma20g00827 . Car20g00712 . . . . . . . . . . . . . . . . . Cone12ag1167 Cone8ag1215 . . Lsi10g00398 . Chy11g00353 . Blo04g00524 . . . . . . . Sed01g0282 . Cmo20g00837 . . . . Cpe16g00262 . Bhi10g01970 Tan05g1265 Cmetu11g1211 . Hepe08g0993 . . . . . . . . . . Csa02g01288 . Cme11g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011027 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31