Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1168 ATGGAGATAGAAAAGAAGAAACCTGAAAACCTTCCATCCTTTTCTCTTCTTTCTTCTTCCTCAACATGCACATCATCTTCTTCAATGGCTATCGTCCTGGTCCTCTTTACTTTCCTTATCCACAGCCCGATTCCCGCCTTGTCCAAGGCTCCAGTCGGCCCCTACGTTCCGAAAGATAACTACCTGATCGCCTGTGGGGCCAAGGAAACCCCCACCCTTCCGGACGGAAGAATCTTTAAAACCGACGAACAAGCCAAGGCCTTGCTAAGCTCCAAAGAGGAAATCAAAGTCTCGCGCCAATTACCATCCAATGCAACATCACCTATCTACTCCTCGGCTCGGGTCTTCACCCAAGAAGCCACCTATGCGTTCCATCTAGCCGAGCCGGGCTGGCATTGGGTCCGGCTTCACTTTTTCCCAATCAAAAACAATGATCAGGATCTCACGAAGGTGAAGTTTAGCGTCACAACCGAAAAATATGTCCTCCTACACACCTTTAACATGCAAAATGACACTGAGGTTGTTCTCAAGGAATTCATCCTAAATACGACCGATCCAAAACTGTCAATTAAGTTTATTCCGATTAAGGATTCAAGAGCTTTTATCAATGCCATTGAAGTCGTTTCGGCTCCGGATAAATTGATCTCGGACTCTGGCACTCTCATTTCACCAGCTAGCAACATGGATGGGCTTTCAGCACGAGCTTTTGAGACCGTTTATCGGGTCAACATGGGCGGCCCGTTGATCACATCACAAAACGATTCTCTTGGACGAACGTGGGTCTCTGATAAGCCTTATATGAAGAACGAGAATCTCGGTAAAACCAAATCGGTACAAACTAGCACCATTAAGTATCAAGAAGGAGAAGAACAAGTAGGAGCATTGATCGGGCCACAAAGTGTCTATGCAACTGCTGTTCAAATGGCAGATGCCGAAGTGGGCATGCCAAACTTCAATGTGACGTGGAACTTCAATGCCGAGCCATTATACGACTACCTAGTCCGGTTCCATTTTTGTGACATAGTGAGCAAAGCGCTGAATGTGCTTTACTTCAACGTGTATGTCAATGAAAGAGCAGCAATTACCGATTTGGACTTGTCACACCTTTTGGGAGGACTAGGAATTGCATACTACAAAGACATTGTAGTCAACGCCTCCATGATTTCAGACATTCTCAATGTTCAAATCGGTCCGGCCAAGAAGGATAGCGGAGATATTAACGCCATATTGAACGGGATTGAGATCATGAGAATAAGCAATTCAGTTAATAGTCTAGATGGGGAGTTTGGAGTGGACGGAAAATCCGCGACTGGTTCATCGAAGAAGGGCACGGTGGCGGCAGTTGGGTTTGGTTTGATGTTCGGGGCCTTTGTAGGGCTCGGAGCAATGGTATATAGGTGGAGAAAGAGGCCTCAAGATTGGCACAAGAGCAAGAGCTTCTCTTCTTGGTTACTTCCGGTTCATGCCAGTGATACGAGCTTTATGCAAAGTAAGACCTCGACAGGTGCCCACCACTCGTCAACCCTAGGCCTCGGTCGGTTCTTCACTTTTGCTCAATTACAAGAAGCCACAAAGAACTTCGATTCAGACGCGATTATTGGAGTTGGAGGATTTGGAAATGTGTATATTGGTGAGATTGATGAAGGGACTAAAGTTGCTGTGAAGCGTGGAAACCCGCAATCCGAACAAGGTATAACAGAATTCCAAACGGAGATTCAAATGCTTTCTAAGCTTAGACACCGGCATTTGGTTTCGCTTATCGGGTATTGCAACGAGAACTCAGAAATGATCTTGGTTTACGAGTTCATGTCCAATGGGCCTTTCAGGGATCACCTATACGGGAAGGACTTACCCCCGTTATCATGGAAACAAAGGCTCGAGATCTGTATTGGATCGGCCCGTGGGCTTCATTACCTTCACACCGGGACAGCCCAAGGTATCATTCACCGTGATGTTAAGACGACTAACATTCTGTTAGACGATCAATTCACTGCTAAGGTTGCTGATTTCGGGTTGTCAAAGGATGCACCGATGGGGCAAAACCACGTAAGCACAGCTGTGAAGGGTAGTTTTGGGTATTTAGACCCAGAATATTTCCGGAGACAGCAATTGACTGACAAGTCCGATGTGTATTCGTTCGGAGTTGTTTTGCTCGAGGCATTATGTGCACGGCCTGCAATCAACCCGGCATTGCCAAGAGAACAAGTGAACTTGGCCGACTGGGCTATGCAGTGGAAGAGAAAGGGGTTGCTCGATAAGATCATTGACCCAATTCTAGTGGGTTCGATTAATCTCGAGTCCATGAAGAAATTTGCCGAGGCTGCCGAGAAATGTTTGGCCGAACATGGCGTTGACAGGCCGACAATGGGAGATGTGTTATGGAATTTAGAATATGCTTTGCAGCTTCAAGAGTCTTTCACACAAGAAAATGCCGAGGAGGAAAGTAAAACTTTGGACCCATCAAGCCTTGTTCCGGTGGCTGCTGCCGAGGTTTCACCGTCCACTCCAGTGGTACCAGAAAGCCGAGCTGTCACTCCACCATTGGTGGAGGAAAATAGAGGGACTGGTAGTGGTTCGGATGAAAGTCCATCTATCGATCACTCGGGGACTGCTATGTTTGCACAATTTTCTAATCTAAACGGTAGGTAA 2649 46.7 MEIEKKKPENLPSFSLLSSSSTCTSSSSMAIVLVLFTFLIHSPIPALSKAPVGPYVPKDNYLIACGAKETPTLPDGRIFKTDEQAKALLSSKEEIKVSRQLPSNATSPIYSSARVFTQEATYAFHLAEPGWHWVRLHFFPIKNNDQDLTKVKFSVTTEKYVLLHTFNMQNDTEVVLKEFILNTTDPKLSIKFIPIKDSRAFINAIEVVSAPDKLISDSGTLISPASNMDGLSARAFETVYRVNMGGPLITSQNDSLGRTWVSDKPYMKNENLGKTKSVQTSTIKYQEGEEQVGALIGPQSVYATAVQMADAEVGMPNFNVTWNFNAEPLYDYLVRFHFCDIVSKALNVLYFNVYVNERAAITDLDLSHLLGGLGIAYYKDIVVNASMISDILNVQIGPAKKDSGDINAILNGIEIMRISNSVNSLDGEFGVDGKSATGSSKKGTVAAVGFGLMFGAFVGLGAMVYRWRKRPQDWHKSKSFSSWLLPVHASDTSFMQSKTSTGAHHSSTLGLGRFFTFAQLQEATKNFDSDAIIGVGGFGNVYIGEIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCNENSEMILVYEFMSNGPFRDHLYGKDLPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDDQFTAKVADFGLSKDAPMGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPALPREQVNLADWAMQWKRKGLLDKIIDPILVGSINLESMKKFAEAAEKCLAEHGVDRPTMGDVLWNLEYALQLQESFTQENAEEESKTLDPSSLVPVAAAEVSPSTPVVPESRAVTPPLVEENRGTGSGSDESPSIDHSGTAMFAQFSNLNGR 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9274822 9277470 + Conep12aG0120700.1 Cone12ag1168 450012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1168 882 Gene3D Transferase(Phosphotransferase) domain 1 603 823 - -
Cone12ag1168 882 FunFam Putative receptor-like protein kinase 60 211 - -
Cone12ag1168 882 FunFam Receptor-like protein kinase FERONIA 603 816 - -
Cone12ag1168 882 PANTHER OS07G0166700 PROTEIN 516 804 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cone12ag1168 882 MobiDBLite consensus disorder prediction 855 882 - -
Cone12ag1168 882 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524(InterPro)
Cone12ag1168 882 FunFam Receptor-like protein kinase FERONIA 235 420 - -
Cone12ag1168 882 SUPERFAMILY Protein kinase-like (PK-like) 511 794 IPR011009 -
Cone12ag1168 882 ProSiteProfiles Protein kinase domain profile. 527 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1168 882 MobiDBLite consensus disorder prediction 828 882 - -
Cone12ag1168 882 Pfam Malectin-like domain 63 417 IPR024788 -
Cone12ag1168 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1168 882 FunFam receptor-like protein kinase FERONIA 490 602 - -
Cone12ag1168 882 SMART serkin_6 527 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1168 882 Gene3D Phosphorylase Kinase; domain 1 489 602 - -
Cone12ag1168 882 Gene3D - 60 211 - -
Cone12ag1168 882 Gene3D - 234 419 - -
Cone12ag1168 882 Pfam Protein tyrosine and serine/threonine kinase 531 723 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1168 882 CDD STKc_IRAK 533 797 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1168 Cone-Chr12:9274822 Cone19ag0058 Cone-Chr19:370210 3.43E-307 dispersed
Cone10ag1113 Cone-Chr10:7929352 Cone12ag1168 Cone-Chr12:9274822 0 wgd
Cone12ag1168 Cone-Chr12:9274822 Cone6ag0428 Cone-Chr6:2080564 2.29E-50 wgd
Cone12ag1168 Cone-Chr12:9274822 Cone8ag1216 Cone-Chr8:10306930 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81977 PF01535 PPR 0.031 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1168 - - - 0.0