Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1169 ATGGAGGTAGCTGGCGTTGATATTTATCCCAGGACTTATTCCACTCCAAATGGGCCGCATTCCAATCAACATAAAAGATTGAAAGTATCTAATGGTGGAAAGGATCATTCTAGCACTGATTCGTCAGCACACATGCTTAATAAAATTGAACAAAAGACACCACATACCTCGTCGAAAGTAATTGATTACACCGATCCATATGCGGTTTCTAAGTTGCTGGAATGTTTAGATGGTGGCAAGTACGGAAGTGTTACTAAAGATTTAGATTTGCTTCTTACTTGGAAGATGCAAGTACTGCGCCCATTAATTGTGGAGTATCCTGCACTTTCAAATATAATACAGGGTAAAGAGTGCTCAAAATTAGAAACTCCAGAAGGTCCTGACCCTGTAAATAACAATGTAATTGATTTGGAGGATGAATCTGCCCCAAATGGTCTTGCAAACGCTGTTTTGGGAAAGAGTCAGCCTATTGTGATTATTGATTCAGACGAGGATGACAATAAAGAACAGAAACCAAGGAGTCTTTTTCAAGGGATCATTTTTCCAGTTGGCTCTCGGGAAGTGTTGATGAAAGATATAGTGGATATTCATTCATTGGGGGCACTTGAATATAACGGAGTTCTAAGAGGAGAGGAAGCACCACTGCCTACTGAAACCCCCGAAATCAAGAAAGAGAAAGATAAAGGTGTTTACGTTGGCGTGGAAGATGAAGCTGATCAGAAGACTGAAATTGAAGATGATGGTCTGGGAGATATATGGATGGAAATGAATATAGCATTAGAGTGTTCCAAGGATGATCTTGGCTACGTCTGTCAAATTTGTGGGATCATTGACCGAGGCATTGAGACAATATTCGAGTTTCAATATAGTAAGTTCAAGAGGAGCACATGTACTTATACATCCGAATATCCAAATGTTGTGGACAAAGAATCAGGGGAGATCTATAAAATTTCTGGGGACGATATGAAAATCACCGAAATTACAGCACACCCACGGCATTTGAAGCAAATGAAAGCACATCAGATGGAGGGTTTCAATTTCCTTGTCAGCAACTTAGTGGGTGATAACCCTGGTGGCTGCATATTAGCCCATGCTCCTGGATCTGGGAAAACTTTTATGATCATCAGTTTCATGCAAAGTTTCTTAGCCAAGTACCCACATGGTAGACCGTTGGTTATTCTTCCTAAAGGAATCTTGTCTACATGGAAAGGGGAGTTTCAAAAATGGCAAGTAGAAGATCTTCCACTATACAATTTTTACTCAGTCGAAGCAGATAATCGGACCCAACAACTGGAAGTTTTGAAAAAGTGGGTCAAAAACAAGAGCATCCTTTTCTTAGGATACAAACAATTCGCGTCAATTGTCTTCGATGATGCAACAAGCAAAATATCTGCTTCTTGTCAAGAAATACTCCTCAAGGCGCCTACTGTTGTCATCATGGATGAAGGACATACTCCTCGAAGTGAAGAGACAGACACATTACAATCTCTTGCAAAGATTTAG 1503 40.19 MEVAGVDIYPRTYSTPNGPHSNQHKRLKVSNGGKDHSSTDSSAHMLNKIEQKTPHTSSKVIDYTDPYAVSKLLECLDGGKYGSVTKDLDLLLTWKMQVLRPLIVEYPALSNIIQGKECSKLETPEGPDPVNNNVIDLEDESAPNGLANAVLGKSQPIVIIDSDEDDNKEQKPRSLFQGIIFPVGSREVLMKDIVDIHSLGALEYNGVLRGEEAPLPTETPEIKKEKDKGVYVGVEDEADQKTEIEDDGLGDIWMEMNIALECSKDDLGYVCQICGIIDRGIETIFEFQYSKFKRSTCTYTSEYPNVVDKESGEIYKISGDDMKITEITAHPRHLKQMKAHQMEGFNFLVSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPHGRPLVILPKGILSTWKGEFQKWQVEDLPLYNFYSVEADNRTQQLEVLKKWVKNKSILFLGYKQFASIVFDDATSKISASCQEILLKAPTVVIMDEGHTPRSEETDTLQSLAKI 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9280140 9282382 + Conep12aG0120800.1 Cone12ag1169 450013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1169 500 Pfam SNF2-related domain 340 497 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone12ag1169 500 MobiDBLite consensus disorder prediction 1 42 - -
Cone12ag1169 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 497 IPR027417 -
Cone12ag1169 500 Gene3D - 305 500 IPR038718 -
Cone12ag1169 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 351 500 IPR014001 -
Cone12ag1169 500 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 233 500 IPR044567 GO:0080188(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1169 K10875 - - csv:101207775 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1169 Cone-Chr12:9280140 Cone5ag0170 Cone-Chr5:706880 1.13E-29 dispersed
Cone12ag1169 Cone-Chr12:9280140 Cone8ag1217 Cone-Chr8:10310671 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44509 PF14543 TAXi_N 4.30E-37 CL0129 Cone TR