Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1171 ATGGCTACTTATTACACAAGTTCAAATAATCCAAGAGACCCCACAACCATGCTGTATTTACGGGATCCTCTCCTCGGTTCGAACACCGAATCACCTGGCAATCTCCATAACAGCGTGATGATGTTCATGAACAATTCCAGGCCCTACTCCTCCAATAACAACTCCTTTCAAGTACTCCCGTCTTCCAGGGGGCCCGCCTCCGGAGCCAACCACCCAAGGCAAGATGATGTCTTGCCCAATTTCGACGCTTGGAGGCATGCACAACAAGAACAGCAAATGGGTGTGCTTAGTAGTAATGTTGTTCCAGGTCAAGGATTGTCGCTTTCACTTGGGACACAATTCGGGCCAGGAATTCAAATGCATTCTTCCCATCCGGGTTTGACGAGTTATACTGAAGAAGAGATGAGAGATGGGAATTTAATGTCCCAGTATGGAAAGTCTAGCGGTGTTATTGTTGGGAGGACAATTCCGAGTTCCAAGTACCTCAAAGCAGCGCAGCAATTGCTTGATGAAGTTGTTAATGTTAGAAAAGCTCTCAAGCAGCAGCAATCTAATAACACTACTACTCTTCAGAACAAACAAGATGATGGAGCAAAAAATCTTGAAGATCAATCGGCAAGTAATCCCAGGTCTGAGCTTTCACATGCTGAAAAACAAGATTTTCAGGACAAACTAACTAAGCTATTGTCTATGTTGGACGAGGTTCATAGAAGGTACAGGCAGTACTATCATCAGATGCAGATCGTTGTGTCATCTTTGGATTCTATAGCAGGACCCGGAGCAGCAAAACCGTACTCGGCACTTGCACTCCAGACCATTTCCCGTCATTTTCGGTCTCTACGTGATACAATCACTGCCCAAATTAAGGCTACCCGGTATAGCCTAGGGGATCATGATGATTTCGGGAACAATAAAGGAGTTGGAATAACTCGTCTTCGGTTTGTTGACCGGCAGTTAAGACAGCAGCGAGCCCTACAGCAGCTCGGTATGATCCAACAACATGGTTGGAGACCTCAAAGAGGGCTGCCCGAAAGCTCGGTCACCATTCTCCGTGCTTGGTTGTTCGAGCATTTCCTTCACCCATACCCTAAGGATTCAGACAAGATCATGCTCGCAAGACAAACCGGTTTGACAAGAAGTCAGGTTTCGAACTGGTTTATAAATGCGCGGGTACGACTTTGGAAGCCAATGGTAGAGGAAATGTACAAAGAAGAGATTGGAGAAGCAGAGCTGGAATCTAATTCATCAATGGATAATCTAATTAAGGAAACAAATGATGGAAATAGAGCAACCTCTGAAGACAGAGAGGAAGATTTGCAACAAAGTGCAAGTACAACACTGACCGAGAGATTCGGTCCCGGGCAATTTATGGATTCCAAATTCGGCACTGTACCAGATGCAGAAATGGTGGACCCTACTGTATTAGAAAGTTTCCCTGACTCGATGATTCAATCTGATGGTGGGTCCTACCATTTGTCGGAATTAGGGAGGTTCGGGACCGGAAGTGGGGTGTCACTGACACTCGGCTTGCAGCATTGTGAGGGTAGCAGTAGTAGTAGCCTACCCATATCAAGTGGGATGCACCAAGGGTTTTTTCGGATGAGAGGGGAAGACATTTACGATGGCGGGCCACTGTCTTCTGTTGGACAAACAACAGATTTCGAACGGATGAATAATGTTAACCAGCAACAACACAGGTACGGTTCGTCCAGCATGTATCATGATTTTGTTGTGTGA 1737 45.88 MATYYTSSNNPRDPTTMLYLRDPLLGSNTESPGNLHNSVMMFMNNSRPYSSNNNSFQVLPSSRGPASGANHPRQDDVLPNFDAWRHAQQEQQMGVLSSNVVPGQGLSLSLGTQFGPGIQMHSSHPGLTSYTEEEMRDGNLMSQYGKSSGVIVGRTIPSSKYLKAAQQLLDEVVNVRKALKQQQSNNTTTLQNKQDDGAKNLEDQSASNPRSELSHAEKQDFQDKLTKLLSMLDEVHRRYRQYYHQMQIVVSSLDSIAGPGAAKPYSALALQTISRHFRSLRDTITAQIKATRYSLGDHDDFGNNKGVGITRLRFVDRQLRQQRALQQLGMIQQHGWRPQRGLPESSVTILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGEAELESNSSMDNLIKETNDGNRATSEDREEDLQQSASTTLTERFGPGQFMDSKFGTVPDAEMVDPTVLESFPDSMIQSDGGSYHLSELGRFGTGSGVSLTLGLQHCEGSSSSSLPISSGMHQGFFRMRGEDIYDGGPLSSVGQTTDFERMNNVNQQQHRYGSSSMYHDFVV 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9284332 9287599 - Conep12aG0121000.1 Cone12ag1171 450015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1171 578 MobiDBLite consensus disorder prediction 53 68 - -
Cone12ag1171 578 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag1171 578 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677(InterPro)
Cone12ag1171 578 CDD homeodomain 336 397 IPR001356 GO:0003677(InterPro)
Cone12ag1171 578 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 429 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone12ag1171 578 Gene3D - 331 410 - -
Cone12ag1171 578 MobiDBLite consensus disorder prediction 413 440 - -
Cone12ag1171 578 SMART HOX_1 336 400 IPR001356 GO:0003677(InterPro)
Cone12ag1171 578 FunFam BEL1-like homeodomain protein 4 339 401 - -
Cone12ag1171 578 SUPERFAMILY Homeodomain-like 337 403 IPR009057 -
Cone12ag1171 578 Coils Coil 162 185 - -
Cone12ag1171 578 MobiDBLite consensus disorder prediction 183 212 - -
Cone12ag1171 578 MobiDBLite consensus disorder prediction 183 219 - -
Cone12ag1171 578 SMART prehox3 148 286 IPR006563 -
Cone12ag1171 578 MobiDBLite consensus disorder prediction 53 75 - -
Cone12ag1171 578 Pfam Associated with HOX 156 285 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0125 Cone-Chr10:633452 Cone12ag1171 Cone-Chr12:9284332 6.34E-84 dispersed
Cone12ag1171 Cone-Chr12:9284332 Cone19ag0426 Cone-Chr19:3526526 1.30E-96 dispersed
Cone12ag1171 Cone-Chr12:9284332 Cone4ag1938 Cone-Chr4:13683402 8.29E-68 wgd
Cone12ag1171 Cone-Chr12:9284332 Cone7ag1850 Cone-Chr7:11983330 1.64E-70 wgd
Cone12ag1171 Cone-Chr12:9284332 Cone8ag1218 Cone-Chr8:10314758 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44510 PF00481 PP2C 4.90E-39 CL0238 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1171 - - - 0.0