Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1174 ATGGGTTTGCAAGAGTTGTCTTCTTTAAGAGTCTTCATTGCTGTACTGGGTTTGGTTCTCAATGTTGTCGATTTTTGTGATGGCAAGAGAATCAGCACCTATGTGCGGGCCTCGACCAGTACGGACATGCCCCAATCAGCCTTCCCACCTCCTCCAGGCGCCAATGCACCCGAACAGGTTCATATAACACAAGGCGACCATGTGGGGACGGCAGTGCTCGTGTCATGGATCACTCCTAATGCAGCAAGTGTAACTCAAGTTTATTACTGGACTAATGTTAATAACAAACTAACTTCAACTGATTGTGTTGTTGTTACTTACACATACTACACTTACAAATCCGGTTACATTCATCATTGCAATATCAGTGGTTTGCAGTATAATACTCAATACTATTATCAAGTTGGAAAGGGGAGCTCGTCAAGAACATTCTTCTTTACAACTCCTCCAGCAGTAGGCATTGATGTCCCATATACATTCGGCCTCATCGGGGATCTTGGACAAACTTATAATTCAAACACTACACTCACACACTATCAAAACAACCAGCTAAACCCGAAAACGATATTGTACCTTGGAGATCTCTCTTATGCGGACGATTATCCTAATCATGACAACACTAGATGGGACACGTGGGGCAGGTTTGTCGAAAGGGTTGCTGCCTATCAGCCTTGGATCTGGAATTCTGGGAACCATGAAGTTGACTTCGCCCCAAGCCTTGGTGAAACAAAGCCTTTCAAGCCATATTCGAATCGCTTCCACACTCCTTACAATGCGTCTGGCAGTACTACTCAGTTTTGGTACTCAATTAAGAGAGCTTCTGCATACATTATAGTCCTTGCCTCATACTCGCCATATGGCTACTCAACCCCTCAATACAGTTGGGCTGGAGCAGAGTTTAAGAAAGTAAACAGAAGCGAGACGCCATGGTTGATTGTGACCATGCATGCACCATGGTACAATAGCTATGTCAACCATTACATGGAAGGAGAACCCATGAGAGTAGTGTACGAGAGTTTGTTCGTCAAATACAAAGTCGATGCAGTGTATGCTGGTCATGTCCATGCTTATGAAAGATCTGAACGTGTATCCAATATCCAATACAACATCACAAATGCACTTTGCACCCCTACGTTCGATCAATCGGCTCCTGTATACATAACTGTTGGGGATGGAGGAAACCTGGAAGGCTTAGGGTCATCCTCTGGGACACAACCAAGCTACTCAGTTTACCGGGAGCCGAGTTACGGGCATGCCATTCTTGACATAAAAAATAGGACACATGCTTTCTTCGGTTGGTTCCGCAATCAGGATGGGTATGCAGTCGAAGCTGATTCTCTGTGGCTCTTCAACAGGTATTGGTACCCAGTGAATGATTCCGTCAGTACTTAA 1392 44.76 MGLQELSSLRVFIAVLGLVLNVVDFCDGKRISTYVRASTSTDMPQSAFPPPPGANAPEQVHITQGDHVGTAVLVSWITPNAASVTQVYYWTNVNNKLTSTDCVVVTYTYYTYKSGYIHHCNISGLQYNTQYYYQVGKGSSSRTFFFTTPPAVGIDVPYTFGLIGDLGQTYNSNTTLTHYQNNQLNPKTILYLGDLSYADDYPNHDNTRWDTWGRFVERVAAYQPWIWNSGNHEVDFAPSLGETKPFKPYSNRFHTPYNASGSTTQFWYSIKRASAYIIVLASYSPYGYSTPQYSWAGAEFKKVNRSETPWLIVTMHAPWYNSYVNHYMEGEPMRVVYESLFVKYKVDAVYAGHVHAYERSERVSNIQYNITNALCTPTFDQSAPVYITVGDGGNLEGLGSSSGTQPSYSVYREPSYGHAILDIKNRTHAFFGWFRNQDGYAVEADSLWLFNRYWYPVNDSVST 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9296505 9298716 - Conep12aG0121300.1 Cone12ag1174 450018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1174 463 SUPERFAMILY Metallo-dependent phosphatases 157 454 IPR029052 -
Cone12ag1174 463 PANTHER ACID PHOSPHATASE RELATED 14 452 IPR039331 GO:0003993(InterPro)
Cone12ag1174 463 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 56 152 - -
Cone12ag1174 463 Pfam Purple acid Phosphatase, N-terminal domain 57 148 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone12ag1174 463 Pfam Calcineurin-like phosphoesterase 159 357 IPR004843 GO:0016787(InterPro)
Cone12ag1174 463 Gene3D - 153 461 IPR029052 -
Cone12ag1174 463 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 153 460 - -
Cone12ag1174 463 Pfam Iron/zinc purple acid phosphatase-like protein C 383 441 IPR025733 -
Cone12ag1174 463 SUPERFAMILY Purple acid phosphatase, N-terminal domain 45 150 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone12ag1174 463 CDD MPP_PAPs 155 451 IPR041792 -
Cone12ag1174 463 Gene3D - 56 151 - -
Cone12ag1174 463 ProSiteProfiles Fibronectin type-III domain profile. 56 151 IPR003961 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1174 K22390 - - rcu:8284339 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1174 Cone-Chr12:9296505 Cone6ag1657 Cone-Chr6:12638475 3.09E-204 dispersed
Cone12ag1174 Cone-Chr12:9296505 Cone17ag1369 Cone-Chr17:9537564 8.23E-214 wgd
Cone12ag1174 Cone-Chr12:9296505 Cone8ag1220 Cone-Chr8:10324613 1.47E-226 wgd
Cone12ag1174 Cone-Chr12:9296505 Cone9ag1581 Cone-Chr9:11354951 2.30E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1174 Cone8ag1220 . . . Csa07g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97