Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1185 ATGGAAGCCGAAGAAGATGAGAATTTGAACGTCGACAAACCTTCTCTTCAAGTTGTGGACGCCTCTGACTGTGACTCGCATGTTAAGCTTGAGAGCACCCAACAGAAATGCGAACTTGAGCTTGAGCCTTCGCCTGTTGCAGGCAGCGAGTCTGAACAAATACCCGTTTCTAAGAATGACGATGAAGATATGACTGGTGAAAATGATGGTTTGACTATTGGCGCGGATTTGAAGATCGAGAAAACTGATATTGTGGAGGATACAGAGGTATTGGAGGAGAAGGTTGTGGATGATGTGGTGGAAGATACTGTGAAAGTGGTAGTGGAGCCGAAAATTGACGCTGATGTGATGGAGAGGAAAATAGAGCATCATGTGGTGGAGACTGAGTTCTCGGGGCAAAACATTGTAGCTGATATGATGGAGGACACGGAAGTGGAAGAGAAGGTCGTGGAAGACTTGGCGGGGGAGCAAGATGTTGTAGCTGCTGTGATAAAAGATACGGTTCTCGAGGAGAAGGTCGTGGATGACTTGGCGACGCAGCAAGACGTATTAGCTGATGTGACGGAGGATACGGTAGTGGAGGAGAAGCCTATGGATGACTTTGACGGGGAGGAAAACGTTGTGGCTTTTGCGATGGAGGATGCAGTGGTGGAGGAGAAAGCCGTGGATGACATGTCAGGAGAGCAAAACGTTGTAGCTGATGCGTTGGAGGAGAAGGCCGTGGTTGACATGGCTGGGGAGCAACATTTTGTAGCTGATTTGATGGAGGAGAAGGTCGGGACTGACTTGGTGGGGGAGCAAAATGCTACAGCTGATGGGACGGTAAATAAGGTGATGGAGGAAAAGGCTGTGGCTGACTTGGAAGAGGAGAAGGAAGCAGAGCGAGAAAAGGAGGTGGTAGAGCAAGTTGTTGCAGCTGGCTCCCCAGCTGAGACTTTTGTAGCTGAAAGGCTAGAGGAAGAGGAAATCAGAGGGGGGTCGAATTTGATGGGCGATGCAGAGAAGAAATGGACCGAGGGGATAGGTGTGGCTAATGAAGTGGAGGAGACAAAACAGGATACGGATGATGGTCTGCAGGATAAGGATGCGGTATTAGGCCTCCCTAATGTGGTTGAGGAGACTGATGCATATGAGAAAGGTCACATGCCTGAAGTGGCCGAGAATATAAATGTTGCAGAGCAAGCAAACCTTTTTATGGAGAAGGATTCAATCGTACAACAGCAACTGGCCGAGAAGGAGGAGGAAGAGGTGATTGGAGCTGATTTGGCGGATGAGAGTGTTAAAGACGAGGAAGTGGAGAAGCTGGCTAATGGGACTGAAAAGACTATTGAAGTGGTGATCGCGAAAGACAAGACTGCACAGACAGAGGAAATGGATTTTGGGGAAGACTTGACAACTAAGCCAGAGGATGATGCTGAACATGATAATTCAGAGGTAAAGGGGATGGCTAAAATAGTGGATGAGACTACGGAGACAGAGGAGATGCAGAATGACATGGATGGGACAATGGAGTTGGAGGAGATGGAAGTTGACAAAGCTGATATGGTGGGGGAGACAACAGAGATAGAGGAGGTGGAAGCTGTAAATGAGGCTGAGGAGATGGAAGCAGTTGATGAGGCCGAGGAGATGGAAGTGGGAGATGAGGCTGAGGAGATGGAGATGGTTGAGGAAGCAAGTACCAATAATGGAAGTAAAAAGAAGCGAGGAAAGAATTCTAAGTCTCTGGCAAAAGTGCCGTCAAAGAAAAAAATGGAAGAGGATGTTTGCTTCATTTGCTTTGATGGCGGTGAACTGGTGCTCTGTGACCGCAGGGGCTGCCCGAAGGCTTATCATCCTTCTTGTGTCAATAGGGATGAGGCCTTTTTCAAAGCCAAGGGCAGGTGGAATTGTGGCTGGCACCTCTGTAGCAAATGTGAAAAGACTGCATACTATATGTGTTTTACATGTACGTTTTCCTTGTGCAAGAGCTGCACTAAAGATGCAGTATTCTTGTGTGTTAGAGGAAACAAAGGTTTCTGTGAGACATGCATGAAAACTATCATGTTGATTGAAAAGAAGGGGCAGGAGAATGTAGAAGTGGCTCAAGTTGATTTCGACGACAAAAGTAGCTGGGAGTATCTTTTCAAGGATTATTGGACCGACCTAAAAGGCAGGCTTTCTATAACTTTTGAGGAACTTACTCGGGCCAAAAATCCTCGGAAAGGAAGTGATACATCTGCAGGTAAACTGGAATCTGCTGATGAACTTTATGATGCTAATGCTGATGGTGGCTCAAACTCAGACAGTCCTGAAAATCTAGGACTTGGTAGCTCTAAGAAAAGGAAAACAAAGAAAAGATTGAAGTCGCATGCAAAGGAAAGGGATCCACCTAAAAGGTCGAGACTAACTGGTTCACATGGGCAATCCGCAACGGGAAGCGTTGAGTGGGCATCAAGAGAGCTTTTGGAGTTTGTTATGCATATGAGGAATGGTGACAAATCTGTTTTGTCTCAGTTTGACGTGCAGGCTCTTTTGCTAGAATACATAAAAAGAAATAAGCTCCGTGATCCTCGCCGGAAAAGTCAAATAATATGTGACTCCAGGTTTGAAAATTTGTTTGGGAAGCCACGTGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAGTCCCACTTTCTTATAAAAGAGGATTCCCAGGTGGATGATTTTCAAGGCAGTGTTGTTGACACTGAAGCTAGTCAATTAGAGGTTGATGTGAAGGCTGGAAAAGACAGGAAACGTAAAGCACGTAAGAGGAGTGATGGGAGAGGGCCATGCTCTAATCTTGAAGATTATGCTGCCATTGATATACACAACATTAGTTTGATCTATTTAAAGCGTAGCTTGGTGGAGGATCTGCTTGACGATATGGTAAAGTTTCATGATAAGGTTGTTGGTTCTTTTGTGAGGATAAGGATATCAGGTAGCGCACAAAAGCATGATTTGTATAGGCTGGTCCAGGTTGTAGGCACATGCAAAGCTGGAGAGCCTTATAAAGTTGGTAAAAAGATAACAGATACCATGCTGGAGATATTGAATTTAAACAAGACAGAGATCATATCAGCAGATATTATTTCAAACCAAGAGTTTACCGAGGAGGAGTGCAAGCGTCTCCGTCAGAGCATAAAATGTGGTCTGATCAACCGGCTCACTGTGGGTGACGTTCATGAAAAAACAATGGCACTGCAAGAAGTAAGAGTGAAAGATTGGCTGGAAACAGAGATAGTTCGCCTCAGTCATCTTCGTGATCGAGCTAGTGAGAAAGGACGTAGGAAGGAGCTCAGAGAATGTGTAGAAAAGTTGCAGCTTCTGAAGACACCGGAGGAACGGCAGCGTAGATTGGAGGAAACTCCAGAAATTCATGTTGATCCAAATATGGATCCAAATCACGAGTCAGAAGAAGAGGAAGAAACAGAAGAAAAGAAACAAGAAAGCTTCATCCGTCCAAGAGGCACCGGCTTTGGAAACAGAACAAGGGAGCCCATTTCTCCTCAGGTGGGTGGCTCTGCAATGAGCGATAACTGGACTGGGATGAGAAACTTTTCCACCCCAACTCGGGAATTGAACAGAAACTTGTCTAACAAAGGGTTCTATAACAAAGTGGAGGATTCTACAGGGTCTGGAGAAATAGTAAATGAAAATTCCTGGGATCAAGGAAGAGAAACTGACGTGCAATCAAGGAGTTTAGAAAAGCAACAACATTCTTTGAGCTCAGAAACCATTGTCAGAAACACTCAACCTGCAGCAGCATCCAGTTTATCTTCTGCTGGTACATCACAAACTCCAGTCTCACCTGCTACCAAAATCAATGAATCAGAGAAAATGTGGCATTACAAGGATCCATCTGGGAAGATACAGGGGCCATTCTCCATCACGCAACTGCGAAAGTGGAGTATCACTGGCTATTTTCCTTCGGACTTGAGAATCTGGAAAACTGCTGAGGAGCCAGATGATTCCATACTTTTGAATGATGCCTTGGCTGGAAAGTTCGAGGAAGAGACTCCATTGGTGAACAATTCACACCACTCTCCCTTGTTTTCTGGGAAACCTCATGGAATGGCATTACAGCAAGGTGTAGAAGTTCAGAATTCTAGAGCATCAATTATACATGGGAATCTAGGCTCTTCTGATTCATCTGCTGCAGGAAATTCGACATCTCGGAATGAAGTTTCTTCCTCAGCTGGAAGGGCTACTACTTCAATTGACCTTCCAAAGTATTCAACAGACTACAATAGTAGAAATGATTCAACAAACCTCCCTTCACCTACTCCAAGCCCAAGTAGGCCCATTGGCCGTCCAGCTCAACCAGCTAGCTTGGTTTTGGGTTTGCAACATAATGCCAGATTTATAGCTGAGAGTCCAACCCCCAAGTCAGACGTTCTTCAAATGCACTCTCAATCAGTAGTGGGTGCATCTGTTTTGCCAGATGGATCAATGAACCCAGCAGCTGATATAAAGGGCATTAGTGCAAATCTCCAAAGCTTGGTTCAATCTATAAATAACCGTAATCCCTCTACTGCAAATCAAGGATGGGGATCTAGTTCAGTTTCAGCTCCTGAGATGAACGTTTCGGGTCAAACATCTGGAAATGTATCTAGAATCTGGGGAACTGCACAATCTCCAAAAGTAGAGCAGAATAACTCTTCTAGTATGCCCACGCAACTTCCCCATAGTCAGTGGGGGGACCCACCATCTACCCAAAATTCCGCTCCATCTTACAATTCTGGAACCCTTGCAGGGAATTTTTCAACTGGTTATTCCAGTGTGCCTCAAGCTGATCCCTGGAGACCTTCTGTCCCTGCCAATCAGCCAATTGTCCAGGCCTCAGCTTCAGCTAATCTTTCTTGGGGCATGGTCACTCCGGATAACCAAATTACTGCCCCTAGACCAACAGGGATGGAGAGTCAAAACACTGGGTGGGGCCCAATTCCGGGAAATCCAAACATGGGGTGGGCTGGACAGGTACCTGGAAATGCCAACCTAGGGTGGGTTGCTCCTGGACAGAACCCTGGACCTGGTAATGTAAATCCTATTTGGGGTCCGACTGCAAATGCCATTCCGGGATGGGTCCCTCATAATCAAATGCCGGCTCCACCTGTTAATATGAATCAAGGTTGGATTGCTCCTCCTGCTCAAGCACTGCCACCTGGAAATACGAATTCCGGTTGGGGCCCACCTCCTACTGGGAATCAGACAGGTATGTGGGGAAGTGAACAAAGCAACAATGTAGATAGAACAACTTCTCAAGGTGGAAATTCTGGTTATGGTGGGGGTAAACCTTGGAACAGGCAGTCAGCTTTTGTTGGTGGTGGTGGTGGTGGCGGAGGGTCTTCTTCAGGGCCTCCTTTGAAAGGACAGAGAGTGTGCAATTACCATAAGAACGGACATTGCAGGAAAGGAGCTGCGTGCGATTACCTACACACCTGA 5442 46.01 MEAEEDENLNVDKPSLQVVDASDCDSHVKLESTQQKCELELEPSPVAGSESEQIPVSKNDDEDMTGENDGLTIGADLKIEKTDIVEDTEVLEEKVVDDVVEDTVKVVVEPKIDADVMERKIEHHVVETEFSGQNIVADMMEDTEVEEKVVEDLAGEQDVVAAVIKDTVLEEKVVDDLATQQDVLADVTEDTVVEEKPMDDFDGEENVVAFAMEDAVVEEKAVDDMSGEQNVVADALEEKAVVDMAGEQHFVADLMEEKVGTDLVGEQNATADGTVNKVMEEKAVADLEEEKEAEREKEVVEQVVAAGSPAETFVAERLEEEEIRGGSNLMGDAEKKWTEGIGVANEVEETKQDTDDGLQDKDAVLGLPNVVEETDAYEKGHMPEVAENINVAEQANLFMEKDSIVQQQLAEKEEEEVIGADLADESVKDEEVEKLANGTEKTIEVVIAKDKTAQTEEMDFGEDLTTKPEDDAEHDNSEVKGMAKIVDETTETEEMQNDMDGTMELEEMEVDKADMVGETTEIEEVEAVNEAEEMEAVDEAEEMEVGDEAEEMEMVEEASTNNGSKKKRGKNSKSLAKVPSKKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFKAKGRWNCGWHLCSKCEKTAYYMCFTCTFSLCKSCTKDAVFLCVRGNKGFCETCMKTIMLIEKKGQENVEVAQVDFDDKSSWEYLFKDYWTDLKGRLSITFEELTRAKNPRKGSDTSAGKLESADELYDANADGGSNSDSPENLGLGSSKKRKTKKRLKSHAKERDPPKRSRLTGSHGQSATGSVEWASRELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRFENLFGKPRVGHFEMLKLLESHFLIKEDSQVDDFQGSVVDTEASQLEVDVKAGKDRKRKARKRSDGRGPCSNLEDYAAIDIHNISLIYLKRSLVEDLLDDMVKFHDKVVGSFVRIRISGSAQKHDLYRLVQVVGTCKAGEPYKVGKKITDTMLEILNLNKTEIISADIISNQEFTEEECKRLRQSIKCGLINRLTVGDVHEKTMALQEVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEETPEIHVDPNMDPNHESEEEEETEEKKQESFIRPRGTGFGNRTREPISPQVGGSAMSDNWTGMRNFSTPTRELNRNLSNKGFYNKVEDSTGSGEIVNENSWDQGRETDVQSRSLEKQQHSLSSETIVRNTQPAAASSLSSAGTSQTPVSPATKINESEKMWHYKDPSGKIQGPFSITQLRKWSITGYFPSDLRIWKTAEEPDDSILLNDALAGKFEEETPLVNNSHHSPLFSGKPHGMALQQGVEVQNSRASIIHGNLGSSDSSAAGNSTSRNEVSSSAGRATTSIDLPKYSTDYNSRNDSTNLPSPTPSPSRPIGRPAQPASLVLGLQHNARFIAESPTPKSDVLQMHSQSVVGASVLPDGSMNPAADIKGISANLQSLVQSINNRNPSTANQGWGSSSVSAPEMNVSGQTSGNVSRIWGTAQSPKVEQNNSSSMPTQLPHSQWGDPPSTQNSAPSYNSGTLAGNFSTGYSSVPQADPWRPSVPANQPIVQASASANLSWGMVTPDNQITAPRPTGMESQNTGWGPIPGNPNMGWAGQVPGNANLGWVAPGQNPGPGNVNPIWGPTANAIPGWVPHNQMPAPPVNMNQGWIAPPAQALPPGNTNSGWGPPPTGNQTGMWGSEQSNNVDRTTSQGGNSGYGGGKPWNRQSAFVGGGGGGGGSSSGPPLKGQRVCNYHKNGHCRKGAACDYLHT 1813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9349563 9358555 - Conep12aG0122500.1 Cone12ag1185 450029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 750 805 - -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1163 1227 - -
Cone12ag1185 1813 ProSiteProfiles Zinc finger PHD-type profile. 586 652 IPR019787 -
Cone12ag1185 1813 Coils Coil 276 297 - -
Cone12ag1185 1813 Pfam Plus-3 domain 944 1047 IPR004343 GO:0003677(InterPro)
Cone12ag1185 1813 CDD PHD5_NSD 588 633 - -
Cone12ag1185 1813 ProSiteProfiles Zinc finger C3H1-type profile. 1788 1813 IPR000571 GO:0046872(InterPro)
Cone12ag1185 1813 ProSiteProfiles SWIB/MDM2 domain profile. 803 886 IPR003121 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1375 1426 - -
Cone12ag1185 1813 ProSitePatterns Zinc finger PHD-type signature. 589 649 IPR019786 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 533 577 - -
Cone12ag1185 1813 Gene3D - 940 1070 IPR036128 GO:0003677(InterPro)
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 32 72 - -
Cone12ag1185 1813 FunFam Zinc finger CCCH domain-containing protein 19 578 678 - -
Cone12ag1185 1813 Pfam GYF domain 1281 1321 IPR003169 GO:0005515(InterPro)
Cone12ag1185 1813 SUPERFAMILY GYF domain 1272 1331 IPR035445 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1720 1787 - -
Cone12ag1185 1813 CDD SWIB-MDM2_like 809 884 - -
Cone12ag1185 1813 FunFam Zinc finger CCCH domain-containing protein 19 796 891 - -
Cone12ag1185 1813 Pfam SWIB/MDM2 domain 812 884 IPR003121 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 454 480 - -
Cone12ag1185 1813 ProSiteProfiles Plus3 domain profile. 939 1072 IPR004343 GO:0003677(InterPro)
Cone12ag1185 1813 SUPERFAMILY Plus3-like 940 1069 IPR036128 GO:0003677(InterPro)
Cone12ag1185 1813 Coils Coil 522 542 - -
Cone12ag1185 1813 CDD Bbox1 634 660 - -
Cone12ag1185 1813 ProSiteProfiles GYF domain profile. 1278 1332 IPR003169 GO:0005515(InterPro)
Cone12ag1185 1813 SUPERFAMILY SWIB/MDM2 domain 806 885 IPR036885 -
Cone12ag1185 1813 CDD GYF 1278 1333 IPR003169 GO:0005515(InterPro)
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1506 1583 - -
Cone12ag1185 1813 Gene3D SWIB/MDM2 domain 798 893 IPR036885 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 755 769 - -
Cone12ag1185 1813 SMART rtf1 939 1049 IPR004343 GO:0003677(InterPro)
Cone12ag1185 1813 Gene3D - 1279 1337 IPR035445 -
Cone12ag1185 1813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 680 IPR013083 -
Cone12ag1185 1813 SMART gyf_5 1279 1334 IPR003169 GO:0005515(InterPro)
Cone12ag1185 1813 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 509 1813 - -
Cone12ag1185 1813 SMART PHD_3 588 634 IPR001965 -
Cone12ag1185 1813 SUPERFAMILY FYVE/PHD zinc finger 585 639 IPR011011 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 533 555 - -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1113 1276 - -
Cone12ag1185 1813 SMART swib_2 818 889 IPR019835 -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1113 1133 - -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1375 1439 - -
Cone12ag1185 1813 FunFam Zinc finger CCCH domain-containing protein 19 940 1069 - -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1234 1273 - -
Cone12ag1185 1813 MobiDBLite consensus disorder prediction 1720 1764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1185 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1185 Cone-Chr12:9349563 Cone6ag1664 Cone-Chr6:12672959 2.00E-162 dispersed
Cone12ag1185 Cone-Chr12:9349563 Cone8ag1230 Cone-Chr8:10370478 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44515 PF07714 PK_Tyr_Ser-Thr 2.90E-73 CL0016 Cone TR