Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1189 ATGGGGACAGTTTCTCGGGAGGAGCTAATGAAGTGGGAGAAGATGCGAGAGACAGTTGGAACAGCAAATGCCCGTGAAGAGAAGATTATGGTTTTAGTGAGGTTGAGGCCTTTAAGTGAGAAGGAGATCGAGGTGAATGAAGTAGCAGATTGGGAATGCATCAATGGTAATACTATCTTGTACCGCAACACATTGAGGGAAGGATCCACATTTCCAAATGCCTATACTTTTGATAGAGTGTTCCGAGGAGACTGTTCTACGAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCACTTTCTGTAGTCAGTGGTATAAACTCTAGTATCTTTGCATATGGGCAAACAAGCAGTGGAAAGACGTACACAATGAATGGAATTCTCGAGTATTCAGTGGCTGATATATTTGATTACATACAAAGGCATGAAGAAAGAGCATTCGTCTTGAAGTTCTCCGCAATTGAGATTTACAATGAAGCAGTTAGAGACCTCTTAAGCACAGACAATAGTACTACACTCAGACTGCTAGATGATCCTGAGCGAGGAATTATTGTGGAGAAAGTGACAGAGGAAACTCTAAGGGACTGGAACCATTTAGAGGAGCTGATTTCTATTTGTGAAGCTCAAAGGCGGATAGGGGAGACTTCTCTCAATGAAAAAAGCTCTAGATCTCATCAAATTATTAGATTGACAATTGAAAGTTCTGCTCGAGAGTTTCTAGGCAAGGATAATTCAACCACCCTTGCAGCAAGTGTGAATTTTGTTGATTTGGCTGGGAGCGAGCGTGCATCTCAAGCAATCTCAGCTGGTGCCAGATTGAAAGAAGGTTGTCACATAAATCGCAGTTTACTAACTCTAAGTACTGTTATCCGCAAGCTAAGTAAGGGAAGAAATGGGCATATCAATTACAGAGATTCTAAGCTTACGCGTCTTCTACAGCCTTGCTTAGGTGGCAATGCTAGAACAGCTGTCATCTGCACCTTGAGTCCCGCAAGAAGCCATGTTGAGCAAACTAGAAACACCCTTCTCTTTGCATGTTGTGCAAAAGAAGTGACCACAAAAGCACAAGTAAATGTTGTCATGTCTGATAAGGCCTTGGTTAAGCATTTACAGAAAGAGTTGGCTAGATTGGAGAGCGAGTTAAGAACTCCTGTCCCGGTTTCCTCGAATTCTGACTATGCTGCTTTACTTAGAAAGAAAGATCTTCAAATTGAAAAGATGGGAAAGGAGATCAGAGAGCTCACTAAACAAAGAGATCTTGCTCAGTCTCGGGTTGAGGATTTGCTTCGTATGATTGGAAATGATCAAGACTCAAGAGAGGAATGTTCAGCTTCGGAATCCTCAATCATATCTAATTCTCATAGGACCCATGCCTGGACTCCAGAAAACACGAAAAACCATTTGTTATCCAACGGGACCTCTTCATTACTATCTAATAGAATGAATTTGGTAAATGCAGATGATTCTGATGATTGCAGGGAAGTTCAATGTATTGCGACGGAGTCAAGCCGAGGCAACAACTCTCAGTCTCTTGCCTTTTCAACAGTTGAAAATGGTGACATGTTCGATCATGAAGTGATGTCAGCACCTTCAAATGGAAACAGAGAAGTGAGCCAGATGCAAAATGGATGTACTACATCTGTTGAACTGGAGGAAAGACTCCACAGTGTCCAAACGCCCATTGACTCTCTAGTCAGTCCTTTCCCTGATGACATGGGAGAAGATACTCCAAACGTTAAAAGCATGAAGCTAACTAGAAGCTCGAGTTGCAGGGCGAATGCCATGACAGTCTCATCTTCTCCAGATAGAAGGGATAGCACTCCACCTTATGAGTTTGAGACAGGCTTTCCTGGAAGACCAGATAATTTTCCAACGAAGTTCCATCCGTTAAATTACGGTCCTAGGTTGGATTCCCAGTCTTCCATTGGAAGTGCTCATAGTAGTATCAGAACTTCTGCAGAAGAGGATATTACCAGCTTAGATACTTTTGTTGCTGGAATGAAGGAAATGGCCAAGCTTGAGTACAAGAACCAACTTTTTGATGGTCAGGTTCAAGGAGCGGGGGCTAGAACTGATGATACCTTCTCAAGAAATATGAAAAATGTTGGATTACATCCAATGCAAGAGGTGTTAGAAACTCCTTCGGATTGGCCTCAAGTATTTGAGAAGCAACAGAGAATGATTCTAGGACTCTGGCAAACTTGCAACGTCTCTTTAGTCCATAGAACTTACTTTTTCCTTCTGTTCAAAGGTGATACATCTGATGCCATTTACATGGAGGTAGAGCTTAGGAGACTAACTTTCCTCAAGGAAACATTTTCTCATGGAAATCAAGCAGTTGAAGGTGGCCGAACTCTTACACTAGCATCAAGCACAAGGGCTCTACGGCGTGAGAGAGAGATGCTGACTAGGCTGATGCAGAGAAGGTTTTCGGAACAAGAGAGGAAGAGACTGTTTGAGAAGTGGGGTATTTCTTTGAACTCGAAACGAAGGAGACTACAGCTAGCCAACTGCTTATGGAGCAATGTAGAAGATATGAACCACGCTAAAGAGAGCGCTGCCATTGTTGCGAGCCTGGTCAGGTTCGTAGAGCAGGGACAGGCTCTTAAGGGGATGTTCGGGTTAAGCTTCACTCCCCCTCAGGCAATGAGAAGATCCTATATCTGGAAAAACAGTGCGGCATCCCTTTTTTGA 2694 43.17 MGTVSREELMKWEKMRETVGTANAREEKIMVLVRLRPLSEKEIEVNEVADWECINGNTILYRNTLREGSTFPNAYTFDRVFRGDCSTKQVYEEGAREIALSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIQRHEERAFVLKFSAIEIYNEAVRDLLSTDNSTTLRLLDDPERGIIVEKVTEETLRDWNHLEELISICEAQRRIGETSLNEKSSRSHQIIRLTIESSAREFLGKDNSTTLAASVNFVDLAGSERASQAISAGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRLLQPCLGGNARTAVICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPVPVSSNSDYAALLRKKDLQIEKMGKEIRELTKQRDLAQSRVEDLLRMIGNDQDSREECSASESSIISNSHRTHAWTPENTKNHLLSNGTSSLLSNRMNLVNADDSDDCREVQCIATESSRGNNSQSLAFSTVENGDMFDHEVMSAPSNGNREVSQMQNGCTTSVELEERLHSVQTPIDSLVSPFPDDMGEDTPNVKSMKLTRSSSCRANAMTVSSSPDRRDSTPPYEFETGFPGRPDNFPTKFHPLNYGPRLDSQSSIGSAHSSIRTSAEEDITSLDTFVAGMKEMAKLEYKNQLFDGQVQGAGARTDDTFSRNMKNVGLHPMQEVLETPSDWPQVFEKQQRMILGLWQTCNVSLVHRTYFFLLFKGDTSDAIYMEVELRRLTFLKETFSHGNQAVEGGRTLTLASSTRALRREREMLTRLMQRRFSEQERKRLFEKWGISLNSKRRRLQLANCLWSNVEDMNHAKESAAIVASLVRFVEQGQALKGMFGLSFTPPQAMRRSYIWKNSAASLF 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9374447 9380031 + Conep12aG0122900.1 Cone12ag1189 450033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1189 897 PANTHER CENTROMERE PROTEIN E 23 891 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone12ag1189 897 SMART kinesin_4 26 359 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 Coils Coil 360 380 - -
Cone12ag1189 897 Pfam Domain of unknown function (DUF3490) 721 879 IPR021881 -
Cone12ag1189 897 MobiDBLite consensus disorder prediction 582 605 - -
Cone12ag1189 897 Gene3D Kinesin motor domain 19 382 IPR036961 -
Cone12ag1189 897 PRINTS Kinesin heavy chain signature 301 322 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 PRINTS Kinesin heavy chain signature 215 232 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 PRINTS Kinesin heavy chain signature 251 269 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 FunFam Kinesin-like protein 22 382 - -
Cone12ag1189 897 ProSitePatterns Kinesin motor domain signature. 250 261 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone12ag1189 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 382 IPR027417 -
Cone12ag1189 897 ProSiteProfiles Kinesin motor domain profile. 28 351 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 Pfam Kinesin motor domain 34 351 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag1189 897 CDD KISc_CENP_E 28 351 - -
Cone12ag1189 897 Coils Coil 397 431 - -
Cone12ag1189 897 MobiDBLite consensus disorder prediction 582 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1189 K11498 - - vvi:100250389 1138.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1189 Cone-Chr12:9374447 Cone9ag1592 Cone-Chr9:11412526 6.82E-273 dispersed
Cone10ag1095 Cone-Chr10:7662580 Cone12ag1189 Cone-Chr12:9374447 0 wgd
Cone12ag1189 Cone-Chr12:9374447 Cone17ag1382 Cone-Chr17:9583594 3.59E-216 wgd
Cone12ag1189 Cone-Chr12:9374447 Cone8ag1236 Cone-Chr8:10394395 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43