Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1192 ATGCCGGCTCTAGATTTCTGTGTGGATGCTGCCGCTGTAGCTCCTCCTGGCTACGCCTTTGCCAGGATTAGCTCTCTTCTGGCGCCGGTCCCATTTTCCGACGTAACTCCGGTGACAACCAATACAACCATCAACGGCGTCGAGAACTCCCACTGGGCTCCATCTCTCTCATCCTCCCTGTACAAGATAGACGGTTGGGGTGCCCCCTACTTCTCCATCAATGCCAATGGCAATATCGCCGTCCGTCCATACGGAACGGAAACGTTACCTCACCAGGAGATTGATTTGCTCAAGATTGTGAAGAAGGTTTCAGATCCGAAATCATCTGGTGGTCTTGGTTTGCAGCTTCCTCTGGTTATACGTCTTCCTGATATCCTGAAAAACCGTCTCGAATCTCTTCAATCCGCGTTTGATCTCGCTATCCATTCCCAAGGCTACCATGCTCACTACCAGGGCGTTTACCCAGTCAAATGCAATCAGGACCGGTTCATTGTGGAGGACATCGTCAAATTCGGATCTCCATTCCGCTTCGGCCTGGAAGCTGGATCGAAACCAGAACTCCTGCTCGCAATGAGCTGCTTGTGCAAGGGGAACCCAGAAGCTCTTCTGATCTGCAATGGATTCAAAGATGCCGAGTACATTTCTTTGGCTTTGATTGCCAGGAAGCTCGCATTGAATACAGTGATTGTGCTTGAACAAGAAGAAGAGCTAGATCTGGTCATTCGTTTGAGCCAGAAGCTATCTGTTCGTCCTGTTATTGGCATGCGGGCCAAGCTGAGGACAAAGCATTCAGGCCATTTCGGTGGAACTTCAGGCGAGAAAGGAAAATTCGGGCTCACTACAACCCAGATTATACGTGTAGTGCGGAAACTTGAACAAGCCGGAATGCTTGATTGTCTCCAATTACTCCATTTCCATATCGGGTCTCAGGTCCCTACAACTACCCTTCTTGCTGATGGTGTTTCTGAGGCTGCTCAGATCTATTGCGAATTGGTCCGCCTTGGTGCTTGTATGCAAGTGATGGACATTGGAGGTGGTTTAGGTATTGATTATGATGGATCCAAATCCTGTGATTCAGAAATTTCAGTTGCCTATGGGCTCGAAGAATATGCTTTGGCAGTTGTTCAAGCGGTCCGTTGTGTCTGTGACAGTAGGTGCGTCAAGCACCCAGTAATTTGCAGTGAAAGCGGTAGAGCCATTGTTTCTCATCACTCGGTCCTGATCTTTGAGGCTGTTTCTGCTAGTTCTTTCGAGGCTCCTGCTCTGACCTCCCTTGGGCTCCACTATTTTGCAGAGGGACTTGCAGAGGATGTTTCTGCTGATTGCTACAGGAAGCTATCTGATGCGGCTTACCGAGGTGATTATGAAACTTGTTTGTTTTATGCTGATCAATTGAAAACTCTATCTGTTGAACAATTCAAAGAAGGGTCTTTGAATATTGAACAATTAGCTGCTGTTGATGGGCTTTGTGCTCTTGTTTCCAATGCAATCGGAGCTCCTGATCCTGTTCTCACTTACCATGTGAACCTCTCTGTGTTCACTTCAATCCCGGATTTCTGGGGAATTGGCCAGCTTTTCCCCATAGTTCCTATTCATCGTCTTGATCAACGCCCTGTGATGAGAGGGATTCTCTCTGATTTAACATGTGATAGTGATGGGAAGATCGATAAGTTCATAGGCGGTGAGATGAGTCTCCCTCTACATGAAATAGAGGGCAAGAACGGAATTTCTGGCAGCGGAGGACACAGTTACTATCTGGGTATGTTCTTGGGTGGGGCTTATGAGGAGGCTCTTGGAGGGGTCCATAACCTATTTGGTGGCCCGAGCGTAGTAAGCATCTTGCAAAGCGATGGGCCATACAGCTTTGCGGTGACACGGGCCGTGCCAGGCCGCTCTTCCGGGGACATCCTCCGAGGGATGCAGTTTGAGCCGGAGCTTATGTTCGAGACCCTCAAGCATCGGGCAGAGGAGTGCTATGGACAGGATGACGATGATTATGCTGCGCTGGCTAGTAGCCTTGCTCGGTCCTTTCATAACATGCCTTATCTTGTCCCAGAGACTTGTTGCTGCTCTACTGCAATGAATAATGATAATGGATTCCATTATTGCAGTGAGGACGAGTTTAATGCTGCTGTTGATTCTCCTTTCGCCGTGCTCGAGTGTGGTTCAAGCGATTGA 2178 48.67 MPALDFCVDAAAVAPPGYAFARISSLLAPVPFSDVTPVTTNTTINGVENSHWAPSLSSSLYKIDGWGAPYFSINANGNIAVRPYGTETLPHQEIDLLKIVKKVSDPKSSGGLGLQLPLVIRLPDILKNRLESLQSAFDLAIHSQGYHAHYQGVYPVKCNQDRFIVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPEALLICNGFKDAEYISLALIARKLALNTVIVLEQEEELDLVIRLSQKLSVRPVIGMRAKLRTKHSGHFGGTSGEKGKFGLTTTQIIRVVRKLEQAGMLDCLQLLHFHIGSQVPTTTLLADGVSEAAQIYCELVRLGACMQVMDIGGGLGIDYDGSKSCDSEISVAYGLEEYALAVVQAVRCVCDSRCVKHPVICSESGRAIVSHHSVLIFEAVSASSFEAPALTSLGLHYFAEGLAEDVSADCYRKLSDAAYRGDYETCLFYADQLKTLSVEQFKEGSLNIEQLAAVDGLCALVSNAIGAPDPVLTYHVNLSVFTSIPDFWGIGQLFPIVPIHRLDQRPVMRGILSDLTCDSDGKIDKFIGGEMSLPLHEIEGKNGISGSGGHSYYLGMFLGGAYEEALGGVHNLFGGPSVVSILQSDGPYSFAVTRAVPGRSSGDILRGMQFEPELMFETLKHRAEECYGQDDDDYAALASSLARSFHNMPYLVPETCCCSTAMNNDNGFHYCSEDEFNAAVDSPFAVLECGSSD 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9387845 9390927 - Conep12aG0123200.1 Cone12ag1192 450036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1192 725 PANTHER ARGININE DECARBOXYLASE 1 686 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)|GO:0008792(PANTHER)
Cone12ag1192 725 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 149 402 IPR022644 GO:0003824(InterPro)
Cone12ag1192 725 PIRSF ARGDC 37 685 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 SUPERFAMILY PLP-binding barrel 123 404 IPR029066 -
Cone12ag1192 725 Gene3D Alanine racemase 123 404 IPR029066 -
Cone12ag1192 725 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 154 172 IPR000183 GO:0003824(InterPro)
Cone12ag1192 725 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 392 411 IPR000183 GO:0003824(InterPro)
Cone12ag1192 725 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 297 310 IPR000183 GO:0003824(InterPro)
Cone12ag1192 725 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 592 605 IPR000183 GO:0003824(InterPro)
Cone12ag1192 725 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 178 190 IPR000183 GO:0003824(InterPro)
Cone12ag1192 725 CDD PLPDE_III_ADC 113 613 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 NCBIfam arginine decarboxylase 52 683 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 Gene3D - 421 502 - -
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 382 399 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 230 251 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 254 276 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 122 137 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 204 219 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 534 559 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 509 530 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 592 613 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 PRINTS Arginine decarboxylase signature 146 160 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone12ag1192 725 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 154 172 IPR022653 -
Cone12ag1192 725 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 335 348 IPR022657 -
Cone12ag1192 725 FunFam Biosynthetic arginine decarboxylase 123 404 - -
Cone12ag1192 725 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 61 614 IPR009006 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1192 K01583 - - vvi:100233080 1071.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1192 Cone-Chr12:9387845 Cone8ag1240 Cone-Chr8:10406820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43