Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1193 ATGTCTGCAACTTTCAGCGGTGATGAAACGGCACCGTTCTTCGGATTCCTCGGCGCCGCGGCGGCCCTCGTCTTCTCATGTATGGGAGCTGCCTATGGAACAGCGAAGAGTGGGGTGGGAGTAGCATCAATGGGTGTGATGAGGCCCGAGCTGGTTATGAAGTCCATTGTCCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATTATCAGTACCGGGATTAATCCCAAGGCTAAATCATACTACCTATTTGATGGATATGCTCATCTCTCATCTGGTCTTGCTTGTGGTCTTGCCGGGTTGTCTGCTGGAATGGCGATTGGTATTGTTGGTGATGCTGGTGTTAGAGCTAATGCACAGCAGCCAAAGCTTTTCGTGGGAATGATTCTCATCCTCATCTTTGCTGAAGCATTGGCCCTCTACGGCCTCATCGTTGGCATCATCTTGTCCTCTCGAGCTGGGCAGTCCAGAGCAGATTAG 498 49.8 MSATFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9395083 9396867 - Conep12aG0123300.1 Cone12ag1193 450037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1193 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 159 - GO:0016021(PANTHER)
Cone12ag1193 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cone12ag1193 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Cone12ag1193 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cone12ag1193 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cone12ag1193 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag1193 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cone12ag1193 165 Gene3D - 11 162 IPR035921 -
Cone12ag1193 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1193 Cone-Chr12:9395083 Cone4ag1412 Cone-Chr4:11305015 9.09E-95 dispersed
Cone12ag1193 Cone-Chr12:9395083 Cone17ag1386 Cone-Chr17:9600297 1.02E-93 wgd
Cone12ag1193 Cone-Chr12:9395083 Cone20ag0095 Cone-Chr20:434877 6.18E-95 wgd
Cone12ag1193 Cone-Chr12:9395083 Cone8ag1241 Cone-Chr8:10414340 9.26E-68 wgd
Cone12ag1193 Cone-Chr12:9395083 Cone8ag0837 Cone-Chr8:8391216 7.09E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1193 K02155 - mdm:103450546 286.574