Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1197 ATGGGGGAAACTGATGAAGCTAATATAATGCGAAACATGCAATGCTCATTTGGAAATTCTTCCTCTTCATTTCTTAAGCAGCCTTTATCTATGGACCAACTTAATCTTCACTCCACACAAATCCGTTCCCGCCAGTTTCCTCAAAATTTCTCTACAGATGTTACGAAAAGAGTAGGGATTCCGCCTTCACATCCACACCAGATCTCTCCCATTTCACCTTATTCCCAGATCCCACCCCCACGTCCGGCAAATCAGCAACCAAATTCCCAGAATTTCAGTCCAGGACCTTGCCACACCAGATCCTTATCACAGCCTGCATTTTTCTCATTCGATTCATTGCCCCCGTTAAGCCTTTCACCATTTAGAGATACCACATCTTCGTCCATTTCAGACCAGGTTTCGGCCAATGCATCAATGGATGATAGGGATGTAAATTCACATTCTCTATTGCCACCGTCGCCTTATATGAGGGGTAAGTCTCCCAAGGTTGGAGAGAGCTTACCCCCTCGAAAAGCTCATAGGCGGTCTAATAGTGATATCCCATTTGGATTCTCTACCGTGATGCAATCTTCCCCTCCCCTTATTCCATCAAAAGGTTCTGGTAAAGACAGTTTTGGGATGGCAAAGTTGGCCCAGGCCCACTTGGTCAAAAGAGAATCTAGTTGGGAGAGAGATGGTAACAACGTGGAAGGGATGGGCGAGAGGAAATCCGAAGGGGATGTAGTGGTTGATCTGTTTTCTGCTTATATGAACGTTGATAATATTGATTCTTTCAACACTTCTGGGACAGATGACAAGAATGGTAATGAGAATCGTGAGGATTTGGATAGTAGAGCAAGTGGAACAAAGACAAATGGAGGTGATAATAGTGAAAATGAAGCAGAAAGTAGTGTTAATGAATGTGGTGGAAATATGCAGAGAATGGGATTGAGTTCTTCTAATGGGAAAAGGGAAGGGGTTAAAAGGAGTGCTGGAGGAGGTATTGCGCCTACCACTAGGCATTATAGAAGTCTTTCCATGGATAGTTTTATGGGAAAACTGCAGTTTGCTGACAAGTCTCCTAAAATGCCTCCTTCTCCGGGTGCTCAGCTGGGTCAGCTTTCTTTGAACAATTTGGTTGATGGTGATTCAGGAGCTCCTTTTAGCTTGGAGTTTGGAAATGGCGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCCAATGATAAACTTGCAGAAATTGCATTGACTGATCCCAAGCGTGTAAAAAGGATACTGGCAAATCGTCAATCGGCTGCTAGATCAAAAGAAAGGAAGATGCGGTATATTTCTGAGTTGGAGCACAAGGTGCAGTCTCTTCAGACAGAAGCTACTACTCTCTCTGCACAGCTTACTCTTCTACAGAGAGATTCAGTTGGGCTGACAAACCAGAATAATGAGCTGAAGTTTCGTCTTCAGGCCATGGAACAACAAGCTCAACTGCGAGATGCTCTAAATGAAGCCCTAACTGCGGAGGTGCAACGATTGAAGCTTGCTACTTCAGAACCAACCGGGCACAAATCTGTTTCTTCAAATAACCACCACATGTTTCAGCAGAACAATGGTAACTCTACGACCAAACCCGAGTCGAATCAATAG 1617 44.22 MGETDEANIMRNMQCSFGNSSSSFLKQPLSMDQLNLHSTQIRSRQFPQNFSTDVTKRVGIPPSHPHQISPISPYSQIPPPRPANQQPNSQNFSPGPCHTRSLSQPAFFSFDSLPPLSLSPFRDTTSSSISDQVSANASMDDRDVNSHSLLPPSPYMRGKSPKVGESLPPRKAHRRSNSDIPFGFSTVMQSSPPLIPSKGSGKDSFGMAKLAQAHLVKRESSWERDGNNVEGMGERKSEGDVVVDLFSAYMNVDNIDSFNTSGTDDKNGNENREDLDSRASGTKTNGGDNSENEAESSVNECGGNMQRMGLSSSNGKREGVKRSAGGGIAPTTRHYRSLSMDSFMGKLQFADKSPKMPPSPGAQLGQLSLNNLVDGDSGAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRVKRILANRQSAARSKERKMRYISELEHKVQSLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATSEPTGHKSVSSNNHHMFQQNNGNSTTKPESNQ 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9407322 9410375 + Conep12aG0123700.1 Cone12ag1197 450041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1197 538 MobiDBLite consensus disorder prediction 121 143 - -
Cone12ag1197 538 Pfam Basic region leucine zipper 410 462 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1197 538 Coils Coil 429 484 - -
Cone12ag1197 538 CDD bZIP_plant_RF2 414 463 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1197 538 MobiDBLite consensus disorder prediction 179 197 - -
Cone12ag1197 538 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 411 474 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1197 538 SMART brlzneu 409 473 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1197 538 MobiDBLite consensus disorder prediction 507 538 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 280 318 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 66 85 - -
Cone12ag1197 538 Gene3D - 412 464 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 121 203 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 506 538 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 54 98 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 216 236 - -
Cone12ag1197 538 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 154 530 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone12ag1197 538 MobiDBLite consensus disorder prediction 215 236 - -
Cone12ag1197 538 MobiDBLite consensus disorder prediction 256 332 - -
Cone12ag1197 538 SUPERFAMILY Leucine zipper domain 413 464 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1197 538 FunFam probable transcription factor PosF21 412 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1197 Cone-Chr12:9407322 Cone20ag0385 Cone-Chr20:1803649 3.02E-42 dispersed
Cone12ag1197 Cone-Chr12:9407322 Cone17ag1388 Cone-Chr17:9607920 9.01E-153 wgd
Cone12ag1197 Cone-Chr12:9407322 Cone20ag0093 Cone-Chr20:425791 5.45E-139 wgd
Cone12ag1197 Cone-Chr12:9407322 Cone8ag1245 Cone-Chr8:10426305 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44517 PF02569 Pantoate_ligase 6.40E-27 CL0039 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1197 - - - 0.0