Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1212 ATGGATCATCGGCTCCGACAAACGGACGGTTACATTCAAGCGGCGTCAAATTCAATTCCACCGCTTGCTGAATTTTCTCAGCCCCAAAGTCGGTCTCAGCCTAATTCCAGCCAAAGGCCTGAAGGAGAGCAGCCTAAAGATTCAATGGCTGCTAGAAAAATTCAGAAAGCTGACAGAGAGAAATTAAGGAGAGACCGATTAAACGAGCACTTTGTTGAGCTGGGAACTGTCTCAGATCCTGACAGGCCGAAAAATGACAAGGCAACCATTCTAACCGATACAATTCAATTGCTCAAGGACTTAACATCCCAAGTTAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCCCGTGAGTTGACCCAGGAGAAAAATGACCTTAGAGAAGAGAAGGCGTCTTTAAAATCCGATATAGAGATTCTTAACACGCAATATCAACAAAGACTCAGGGCAATATATCCATGGGGTGCCATGGACCACTCAGTAGTGATGGGTCCACCCTCTTACCCATTTCCGATGCCGATACATATGCCTCCGGGCCCAATTGCGATGCATCCATCCATTCAGCCCTACCCGTTCTTCGGAAATCAAAATCCCGGAGTCATTACTAACCAGTGTTCCACATTTGCTCCGTATATACACCCTAATACCTTAGTTGAGCAACAGTCCACTGCCCAATATGTACCTCAATTTGTGCATCCGGGAAGTCAGTCTAACAACCCGGTGAAACAAGATTCCAAGAACAAGGCGGAGAAAACTGAGGATTCTAATGAAGTGACAACTAACTTGGAGTTGAAGACTCCTGGCTCCACAACAGATCAGGGCAAAGAAAATGTAAGGGAACAAAGAGGAAGGAAAGCTATTTTACAGAAGGGAGTTCTTCAAGTAGGTGTTCTTCAGCTCATAGCATACAGGATAGCTCATCCAATAGCATAG 942 44.69 MDHRLRQTDGYIQAASNSIPPLAEFSQPQSRSQPNSSQRPEGEQPKDSMAARKIQKADREKLRRDRLNEHFVELGTVSDPDRPKNDKATILTDTIQLLKDLTSQVNKLKTEYATLTEESRELTQEKNDLREEKASLKSDIEILNTQYQQRLRAIYPWGAMDHSVVMGPPSYPFPMPIHMPPGPIAMHPSIQPYPFFGNQNPGVITNQCSTFAPYIHPNTLVEQQSTAQYVPQFVHPGSQSNNPVKQDSKNKAEKTEDSNEVTTNLELKTPGSTTDQGKENVREQRGRKAILQKGVLQVGVLQLIAYRIAHPIA 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9455206 9457085 - Conep12aG0125200.1 Cone12ag1212 450056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1212 313 Coils Coil 91 146 - -
Cone12ag1212 313 CDD bHLH_AtILR3_like 56 130 - -
Cone12ag1212 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 120 IPR036638 GO:0046983(InterPro)
Cone12ag1212 313 PANTHER TRANSCRIPTION FACTOR BHLH121 26 284 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cone12ag1212 313 MobiDBLite consensus disorder prediction 262 277 - -
Cone12ag1212 313 Gene3D - 49 153 IPR036638 GO:0046983(InterPro)
Cone12ag1212 313 MobiDBLite consensus disorder prediction 10 43 - -
Cone12ag1212 313 MobiDBLite consensus disorder prediction 1 66 - -
Cone12ag1212 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983(InterPro)
Cone12ag1212 313 MobiDBLite consensus disorder prediction 45 66 - -
Cone12ag1212 313 Pfam Helix-loop-helix DNA-binding domain 52 102 IPR011598 GO:0046983(InterPro)
Cone12ag1212 313 SMART finulus 57 107 IPR011598 GO:0046983(InterPro)
Cone12ag1212 313 MobiDBLite consensus disorder prediction 233 285 - -
Cone12ag1212 313 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1212 Cone-Chr12:9455206 Cone14ag1119 Cone-Chr14:9321339 7.10E-08 dispersed
Cone12ag1212 Cone-Chr12:9455206 Cone8ag1264 Cone-Chr8:10483506 3.83E-141 wgd
Cone12ag1212 Cone-Chr12:9455206 Cone8ag0851 Cone-Chr8:8463240 2.48E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44519 PF00996 GDI 3.60E-08 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1212 - - - 0.0