Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1212 | ATGGATCATCGGCTCCGACAAACGGACGGTTACATTCAAGCGGCGTCAAATTCAATTCCACCGCTTGCTGAATTTTCTCAGCCCCAAAGTCGGTCTCAGCCTAATTCCAGCCAAAGGCCTGAAGGAGAGCAGCCTAAAGATTCAATGGCTGCTAGAAAAATTCAGAAAGCTGACAGAGAGAAATTAAGGAGAGACCGATTAAACGAGCACTTTGTTGAGCTGGGAACTGTCTCAGATCCTGACAGGCCGAAAAATGACAAGGCAACCATTCTAACCGATACAATTCAATTGCTCAAGGACTTAACATCCCAAGTTAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCCCGTGAGTTGACCCAGGAGAAAAATGACCTTAGAGAAGAGAAGGCGTCTTTAAAATCCGATATAGAGATTCTTAACACGCAATATCAACAAAGACTCAGGGCAATATATCCATGGGGTGCCATGGACCACTCAGTAGTGATGGGTCCACCCTCTTACCCATTTCCGATGCCGATACATATGCCTCCGGGCCCAATTGCGATGCATCCATCCATTCAGCCCTACCCGTTCTTCGGAAATCAAAATCCCGGAGTCATTACTAACCAGTGTTCCACATTTGCTCCGTATATACACCCTAATACCTTAGTTGAGCAACAGTCCACTGCCCAATATGTACCTCAATTTGTGCATCCGGGAAGTCAGTCTAACAACCCGGTGAAACAAGATTCCAAGAACAAGGCGGAGAAAACTGAGGATTCTAATGAAGTGACAACTAACTTGGAGTTGAAGACTCCTGGCTCCACAACAGATCAGGGCAAAGAAAATGTAAGGGAACAAAGAGGAAGGAAAGCTATTTTACAGAAGGGAGTTCTTCAAGTAGGTGTTCTTCAGCTCATAGCATACAGGATAGCTCATCCAATAGCATAG | 942 | 44.69 | MDHRLRQTDGYIQAASNSIPPLAEFSQPQSRSQPNSSQRPEGEQPKDSMAARKIQKADREKLRRDRLNEHFVELGTVSDPDRPKNDKATILTDTIQLLKDLTSQVNKLKTEYATLTEESRELTQEKNDLREEKASLKSDIEILNTQYQQRLRAIYPWGAMDHSVVMGPPSYPFPMPIHMPPGPIAMHPSIQPYPFFGNQNPGVITNQCSTFAPYIHPNTLVEQQSTAQYVPQFVHPGSQSNNPVKQDSKNKAEKTEDSNEVTTNLELKTPGSTTDQGKENVREQRGRKAILQKGVLQVGVLQLIAYRIAHPIA | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9455206 | 9457085 | - | Conep12aG0125200.1 | Cone12ag1212 | 450056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1212 | 313 | Coils | Coil | 91 | 146 | - | - | |
Cone12ag1212 | 313 | CDD | bHLH_AtILR3_like | 56 | 130 | - | - | |
Cone12ag1212 | 313 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 51 | 120 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag1212 | 313 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 26 | 284 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 262 | 277 | - | - | |
Cone12ag1212 | 313 | Gene3D | - | 49 | 153 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 10 | 43 | - | - | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Cone12ag1212 | 313 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 51 | 101 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 45 | 66 | - | - | |
Cone12ag1212 | 313 | Pfam | Helix-loop-helix DNA-binding domain | 52 | 102 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag1212 | 313 | SMART | finulus | 57 | 107 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 233 | 285 | - | - | |
Cone12ag1212 | 313 | MobiDBLite | consensus disorder prediction | 247 | 261 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1212 | Cone-Chr12:9455206 | Cone14ag1119 | Cone-Chr14:9321339 | 7.10E-08 | dispersed | |
Cone12ag1212 | Cone-Chr12:9455206 | Cone8ag1264 | Cone-Chr8:10483506 | 3.83E-141 | wgd | |
Cone12ag1212 | Cone-Chr12:9455206 | Cone8ag0851 | Cone-Chr8:8463240 | 2.48E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44519 | PF00996 | GDI | 3.60E-08 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1212 | - | - | - | 0.0 |