Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1222 ATGCGCGCTCTCGAAAACGCCATTTTCGTTCCCACTAAACGCAAGAGAAGCCCTCCTACTAAGCTCCCATGCCTGGTCCAATCCCTCCTCAACCTCATTTCTCAAGGTCGCCTTTCAGAAGCCCTCTCCAACCTTGATATTTTAGTCCTCAGAGGAATACGTTTACCTTCTCGCACTCTAGCCCACCTCTTACGACAGTGTGCGAATGCTAAGTATCTTAGAGGAGGCAAATGGGTTCACCTCCATTTGAAACTCACGGGATTCAAACATCCCACTACTTTTGTAGCCAACCATTTGATAAACATGTACTTCAAGTGCCGCGGAAGTGAAGTAGACGCACGCGAGGTGTTTGATAAAATGTCTGTGAGAAATGTGTACTCCTGGAATAATATGCTTGCTGGGTATGCTAAGCTGGGGAATATAAAGCAAGCTAAGAAGTTGTTTGAGGAAATGCCTGAAAAGGACGTTGTGTCGTGGAATACAATGGTGATTGCCTATGCTCAGAAAGGTAGTTATGAGGCTTTAAGTTTATATAAAGAGTTTAGGAGGCTTTCCATAGGATATAACGAGTTCAGTTTTGCTGGTGTATTAACTCTGTGTGTGAAATTGAAGGAATTACATCTCACTAGGCAGGTCCATGGGCAGGTTTTAATTGCCGGGCTCTTGTCAAATCTGGTACTTTCCAGTTCAATTGTTGATGCTTATGTCAAATGTGGGGTCATGGACGATGCAAGGAGATTTTTTGACAACATGTCGATAAGAGATATCCCTGCTTGGACGACTATGGTTTCTGGATATACTAGATGGGGTAATATGAAATTAGCTTGTGAGTTATTTATCCAGATGCCTGAAAAGAATCATGTTTCTTGGACAGCTTTGATATCAGGCTATGCAAGAAACTCTTTGGGACATGAAGCACTGGAGTTGTTCAAACAAATGGTGGAATTTCGAATTAGACCTGATCAATATACTTTCAGCAGCTGCCTTTGTGCTTGTGCCACAATATCAACGCTTAAGCACGGTCTCGTTCAAGACGGGCTAAAGTTTTTCGAGTCCATGAGGTTTGACCATCGCATTGTTCCTGATCAAGAACATTACGCCTGCTTGATTGACCTTCTGGGTCGAGCCGGACATTTCACGGAGTTGATAAAACAGCTCAAGAAGATGCCTTGTAAGCCCAATGATAAAGTTTGGAATTCTTTACTAGGTGTTTGTAAAATGCATGGTAATATGGAGCTTGGAAGAGAAGCAGCTGAGCAATTGATGGAGATGGAGCCTGGATCCTCTGCGACCTACGTGCAGCTTGCAAGCATGTATGCTGAGCTCGGTAGGTGGGAATCTGTAGCGAAGGTTAGAAAGGTGATGAAAGAGCGAGATGTAAGGAAAGAGCGTGCGATTAGTTTGATAGAGATTGAGAATAAGATGCATTCTTTCACTGTGTCTGATAGATTGCATCCATTGAAAGAAGAAATATACTTGCTTTTGCAACAGCTAACTGACCATATGGGACAACCCGATTTGCCTCTATTATTGGTTGGAAGGTAA 1545 43.04 MRALENAIFVPTKRKRSPPTKLPCLVQSLLNLISQGRLSEALSNLDILVLRGIRLPSRTLAHLLRQCANAKYLRGGKWVHLHLKLTGFKHPTTFVANHLINMYFKCRGSEVDAREVFDKMSVRNVYSWNNMLAGYAKLGNIKQAKKLFEEMPEKDVVSWNTMVIAYAQKGSYEALSLYKEFRRLSIGYNEFSFAGVLTLCVKLKELHLTRQVHGQVLIAGLLSNLVLSSSIVDAYVKCGVMDDARRFFDNMSIRDIPAWTTMVSGYTRWGNMKLACELFIQMPEKNHVSWTALISGYARNSLGHEALELFKQMVEFRIRPDQYTFSSCLCACATISTLKHGLVQDGLKFFESMRFDHRIVPDQEHYACLIDLLGRAGHFTELIKQLKKMPCKPNDKVWNSLLGVCKMHGNMELGREAAEQLMEMEPGSSATYVQLASMYAELGRWESVAKVRKVMKERDVRKERAISLIEIENKMHSFTVSDRLHPLKEEIYLLLQQLTDHMGQPDLPLLLVGR 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9503891 9506148 + Conep12aG0126200.1 Cone12ag1222 450066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1222 514 FunFam Pentatricopeptide (PPR) repeat-containing protein 354 506 - -
Cone12ag1222 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Cone12ag1222 514 Gene3D Tetratricopeptide repeat domain 25 174 IPR011990 GO:0005515(InterPro)
Cone12ag1222 514 SUPERFAMILY TPR-like 135 447 IPR011990 GO:0005515(InterPro)
Cone12ag1222 514 FunFam Pentatricopeptide repeat-containing protein At3g49710 65 205 - -
Cone12ag1222 514 NCBIfam pentatricopeptide repeat 126 157 IPR002885 -
Cone12ag1222 514 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Cone12ag1222 514 NCBIfam pentatricopeptide repeat 258 288 IPR002885 -
Cone12ag1222 514 Pfam PPR repeat family 286 333 IPR002885 -
Cone12ag1222 514 Pfam PPR repeat 126 155 IPR002885 -
Cone12ag1222 514 Pfam PPR repeat 157 183 IPR002885 -
Cone12ag1222 514 Pfam PPR repeat 229 252 IPR002885 -
Cone12ag1222 514 Pfam E motif 408 470 IPR046848 -
Cone12ag1222 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cone12ag1222 514 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 57 151 - -
Cone12ag1222 514 Gene3D Tetratricopeptide repeat domain 190 336 IPR011990 GO:0005515(InterPro)
Cone12ag1222 514 Gene3D Tetratricopeptide repeat domain 337 485 IPR011990 GO:0005515(InterPro)
Cone12ag1222 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cone12ag1222 514 FunFam Pentatricopeptide repeat-containing protein At3g49710 206 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1222 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1222 Cone-Chr12:9503891 Cone12ag0016 Cone-Chr12:151452 2.89E-59 dispersed
Cone12ag1222 Cone-Chr12:9503891 Cone8ag1274 Cone-Chr8:10520468 4.84E-247 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33