Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1224 ATGGGCGAGAGGGTGAGTGGTAAGGTGAAGTGGTTCAATGACACTAAAGGTTTCGGATTCATAACCCCTAACGATGAAGGCGACGATCTGTTCGTTCATCAGTCCTCGATCAGATCCGAAGGATTTCGCAGTCTAGCGGAAGGAGAAGATGTCGAGTTTAACATCGAATCGGACTCTAACGGTCGTGCTAAGGCTGTTGACGTAACCGGTCCGGGAGAGGCCCCTGTGCAAGGAAGCCGCGGCGGCGGAGGCGGCGGAGGAAGAGGTGGCGCTGGCGGAAGACGAGGAGGTGGCGGTGGATATGGGTTTAACGGAGGAGGAGGAGGAGGACGTGGTGGTGGTGGAGGAAGAGGAGGGTACGGTGGCGGCGGTTATGGCGGAGGTGGTTATGGAGGCGGCGGAGGTGGCGCTTGCTTTAAGTGCGGTGAGACTGGACACATGGCTAGAGACTGCTATCAGGGCGGAAGCGGTGGAGGAGGCGGAGGTTACGGAGGTGGCGGTGGCGGTGGCGGTGGAAACTGCTACAACTGCGGTGTTTCTGGGCACTTTGCGAGAGAGTGTCCGGATAGGGGCCAGTGA 579 59.07 MGERVSGKVKWFNDTKGFGFITPNDEGDDLFVHQSSIRSEGFRSLAEGEDVEFNIESDSNGRAKAVDVTGPGEAPVQGSRGGGGGGGRGGAGGRRGGGGGYGFNGGGGGGRGGGGGRGGYGGGGYGGGGYGGGGGGACFKCGETGHMARDCYQGGSGGGGGGYGGGGGGGGGNCYNCGVSGHFARECPDRGQ 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9510955 9512655 + Conep12aG0126400.1 Cone12ag1224 450068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1224 192 MobiDBLite consensus disorder prediction 56 95 - -
Cone12ag1224 192 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 CDD CSP_CDS 5 70 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 Gene3D - 169 192 - -
Cone12ag1224 192 Gene3D - 133 159 - -
Cone12ag1224 192 ProSiteProfiles Zinc finger CCHC-type profile. 174 189 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 189 - -
Cone12ag1224 192 SUPERFAMILY Retrovirus zinc finger-like domains 129 190 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 Pfam Zinc knuckle 173 188 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Cone12ag1224 192 Gene3D - 2 81 IPR012340 -
Cone12ag1224 192 SMART csp_8 6 71 IPR011129 GO:0003676(InterPro)
Cone12ag1224 192 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676(InterPro)
Cone12ag1224 192 SMART c2hcfinal6 137 153 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 SMART c2hcfinal6 173 189 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag1224 192 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Cone12ag1224 192 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1224 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1224 Cone-Chr12:9510955 Cone20ag0458 Cone-Chr20:2370666 3.50E-28 dispersed
Cone12ag1224 Cone-Chr12:9510955 Cone8ag1275 Cone-Chr8:10525508 1.91E-56 wgd
Cone12ag1224 Cone-Chr12:9510955 Cone8ag0853 Cone-Chr8:8472957 4.61E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g135 . . . . . Bpe12g00116 . . Cmo19g00739 . . . . . Sed01g3135 . Cpe15g00585 Bhi05g01731 Tan02g0700 Cmetu01g0199 . Hepe02g0435 . . Cla02g00437 Cam02g0446 Cec02g0444 Cco02g0462 Clacu02g0448 Cmu02g0442 Cre02g0776 Cone12ag1224 Cone8ag1275 . . . . . Cme01g01275 Blo04g00561 Blo13g00516 Bda15g01039 Bda14g00610 Bpe15g00819 . Bma03g00602 . . . . . Cma19g00731 . Car19g00560 . . . . . . . . . . . . . . . . Lsi11g01191 . Chy01g00689 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001587 3 2 3 3 4 2 3 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 0 1 3 2 3 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44520 None None None None Cone TF