Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1229 ATGGCCACAGGCTCAAGCACTGAAGCTCTGAGCTCGAGCTCCTCAGAAGCAGCCGCAGTGGTTTCGATGGCGTTACCGATCGTTGACACAGAATACCTCAAGGAGATCGACAAGGCTCGTCGCGACCTCCGTGCTCTGATCGCTAGCAGGAATTGCGCTCCCATCATGCTCCGTTTGGCGTGGCATGATGCTGGTACCTATGATGTAAAGACGAAGACTGGTGGACCTAATGGATCAATTAGGAACGAGGAAGAGTATTCTCATGGTTCTAACAATGGCTTGAAAAGCGCTATAGAGTTTTGTGAGGAAGTGAAATCCAAGCATCCAAAGATTACATATGCTGACCTATATCAGCTTGCTGGTGTTGTTGCTGTTGAGGTTACTGGAGGCCCCACTGTTGACTTTGTTCCTGGCAGAAAGGATTCAAACGTTTGTCCCAAGGAAGGCAGGCTTCCAGATGCTAAACAAGGGTCACCACATCTTCGAGACATTTTCTATCGAATGGGCCTGTTTGACAAGGATATTGTTGCCCTGTCAGGGGGCCATACTCTGGGAAGGGCACATCCAGAGAGATCAGGTTTTGACGGCCCCTGGACACACGAACCTCTCAAGTTTGATAACTCCTACTTTCTGGAGCTGTTGAAAGGAGAATCTGAGGGGTTACTGAAACTTCCAACAGACCATGCGTTGTTGCATGATTCTGAATTTCGTTGTTATGTGGAACTATATGCGAAGGATGAAGATGCATTCTTCAGAGATTATGCTGAATCACATAAGAAACTTTCAGAATTAGGATTTACTCCAAGCTCCTCTGGTGGTAAGGGAATTGTTAAGGACCGGACAATATTGGCACAAAGTGCTGTTGGAGTTGCAGTTGCAGCTGCTGTGGTTGTTCTGAGCTACCTCTATGAAGTGCGCAAGAGAATCAAGTAA 933 47.16 MATGSSTEALSSSSSEAAAVVSMALPIVDTEYLKEIDKARRDLRALIASRNCAPIMLRLAWHDAGTYDVKTKTGGPNGSIRNEEEYSHGSNNGLKSAIEFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSNVCPKEGRLPDAKQGSPHLRDIFYRMGLFDKDIVALSGGHTLGRAHPERSGFDGPWTHEPLKFDNSYFLELLKGESEGLLKLPTDHALLHDSEFRCYVELYAKDEDAFFRDYAESHKKLSELGFTPSSSGGKGIVKDRTILAQSAVGVAVAAAVVVLSYLYEVRKRIK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9537443 9541007 - Conep12aG0126900.1 Cone12ag1229 450073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1229 310 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Haem peroxidase superfamily signature 174 189 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 SUPERFAMILY Heme-dependent peroxidases 33 270 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 17 269 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Cone12ag1229 310 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Cone12ag1229 310 ProSiteProfiles Plant heme peroxidase family profile. 94 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 168 189 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 71 81 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 85 109 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 110 128 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 242 266 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 53 68 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 150 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 190 214 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 32 52 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 PRINTS Plant ascorbate peroxidase signature 129 141 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 FunFam L-ascorbate peroxidase, cytosolic 152 258 - -
Cone12ag1229 310 CDD ascorbate_peroxidase 26 268 - -
Cone12ag1229 310 Gene3D Peroxidase, domain 2 152 258 - -
Cone12ag1229 310 Gene3D - 39 265 - -
Cone12ag1229 310 FunFam Cytosolic ascorbate peroxidase 39 157 - -
Cone12ag1229 310 Pfam Peroxidase 40 246 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag1229 310 ProSitePatterns Peroxidases proximal heme-ligand signature. 174 184 IPR019793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1229 K00434 - - csv:101206941 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1229 Cone-Chr12:9537443 Cone9ag1617 Cone-Chr9:11540097 5.52E-146 dispersed
Cone12ag1229 Cone-Chr12:9537443 Cone8ag1281 Cone-Chr8:10557675 3.74E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63