Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1231 ATGGACGATGGTGAGCTCGAATGCTCGAACCAAGAACTGTTTTCGAGCCAAAACATGGGTGGTGAGCTTCTAAGCAGTAGCTCATTCAACGGTTTCCTGGACCTAGATGGACTTTTCAAAGAGGCTCCTCCTCAAGCTTGTATTCACACACATACTTGCAATCCTCCGGGCCCAGACCACAAGCACACACACACCTGTTTTCATGCCCACATTGCCTCCGCACCAACCGAGGAAGACGAGGCTGCCAACGAGGCAGAATCTACTGAGAAAAAGACGAAAAAACGGCCTTCGGGTAACAGGGATGCAGTTCGTAAATATCGGGAGAAGAAGAAGGCCCGGGCAGCATCATTAGAAGATGAGGTGGTGAGGTTGAGAGCTTTGAATCAGCAGCTGGTGAAAAAGTTGCAGGGTCAAGCTGCATTGGAGGCAGAGATTGCTAGGCTGAGGTGTTTGCTTGTGGATATTCGGGGAAGGATTGATGGGGAGATTGGGACTTTTCCATATCAGAAATCCATCGATCCAAACTTAAACTCGTTGAATATGATGAGCAATATCGGTGGTCCTGGTATGGGTGCTTACATGATGAATCCATGTAATCTGCAGTGTGATGATCAGGTGCACTGCCATCAGTTAGGAGGTCTTGATGGAAAAAATGGAGATGGTGGCACTGGAATAGATGGGCAAGGAACTCGTGCTTGTGAACTTGAGAATAATTTTCAGTGTTCAGCAGGTCAGAACTTGAGTGGATCAAAGAAGTTTCCAGGCCGTTGA 771 47.73 MDDGELECSNQELFSSQNMGGELLSSSSFNGFLDLDGLFKEAPPQACIHTHTCNPPGPDHKHTHTCFHAHIASAPTEEDEAANEAESTEKKTKKRPSGNRDAVRKYREKKKARAASLEDEVVRLRALNQQLVKKLQGQAALEAEIARLRCLLVDIRGRIDGEIGTFPYQKSIDPNLNSLNMMSNIGGPGMGAYMMNPCNLQCDDQVHCHQLGGLDGKNGDGGTGIDGQGTRACELENNFQCSAGQNLSGSKKFPGR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9551826 9553528 + Conep12aG0127100.1 Cone12ag1231 450075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1231 256 Coils Coil 107 134 - -
Cone12ag1231 256 SUPERFAMILY Leucine zipper domain 91 137 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1231 256 Gene3D - 78 155 - -
Cone12ag1231 256 CDD bZIP 99 146 - -
Cone12ag1231 256 SMART brlzneu 86 154 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1231 256 MobiDBLite consensus disorder prediction 84 105 - -
Cone12ag1231 256 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 89 136 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1231 256 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 183 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Cone12ag1231 256 MobiDBLite consensus disorder prediction 74 110 - -
Cone12ag1231 256 Pfam Basic region leucine zipper 88 144 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1231 Cone-Chr12:9551826 Cone8ag1283 Cone-Chr8:10565509 2.51E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44522 PF03094 Mlo 6.10E-210 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1231 K25785 - csv:101208161 287.73