Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag1231 | ATGGACGATGGTGAGCTCGAATGCTCGAACCAAGAACTGTTTTCGAGCCAAAACATGGGTGGTGAGCTTCTAAGCAGTAGCTCATTCAACGGTTTCCTGGACCTAGATGGACTTTTCAAAGAGGCTCCTCCTCAAGCTTGTATTCACACACATACTTGCAATCCTCCGGGCCCAGACCACAAGCACACACACACCTGTTTTCATGCCCACATTGCCTCCGCACCAACCGAGGAAGACGAGGCTGCCAACGAGGCAGAATCTACTGAGAAAAAGACGAAAAAACGGCCTTCGGGTAACAGGGATGCAGTTCGTAAATATCGGGAGAAGAAGAAGGCCCGGGCAGCATCATTAGAAGATGAGGTGGTGAGGTTGAGAGCTTTGAATCAGCAGCTGGTGAAAAAGTTGCAGGGTCAAGCTGCATTGGAGGCAGAGATTGCTAGGCTGAGGTGTTTGCTTGTGGATATTCGGGGAAGGATTGATGGGGAGATTGGGACTTTTCCATATCAGAAATCCATCGATCCAAACTTAAACTCGTTGAATATGATGAGCAATATCGGTGGTCCTGGTATGGGTGCTTACATGATGAATCCATGTAATCTGCAGTGTGATGATCAGGTGCACTGCCATCAGTTAGGAGGTCTTGATGGAAAAAATGGAGATGGTGGCACTGGAATAGATGGGCAAGGAACTCGTGCTTGTGAACTTGAGAATAATTTTCAGTGTTCAGCAGGTCAGAACTTGAGTGGATCAAAGAAGTTTCCAGGCCGTTGA | 771 | 47.73 | MDDGELECSNQELFSSQNMGGELLSSSSFNGFLDLDGLFKEAPPQACIHTHTCNPPGPDHKHTHTCFHAHIASAPTEEDEAANEAESTEKKTKKRPSGNRDAVRKYREKKKARAASLEDEVVRLRALNQQLVKKLQGQAALEAEIARLRCLLVDIRGRIDGEIGTFPYQKSIDPNLNSLNMMSNIGGPGMGAYMMNPCNLQCDDQVHCHQLGGLDGKNGDGGTGIDGQGTRACELENNFQCSAGQNLSGSKKFPGR | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9551826 | 9553528 | + | Conep12aG0127100.1 | Cone12ag1231 | 450075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag1231 | 256 | Coils | Coil | 107 | 134 | - | - | |
Cone12ag1231 | 256 | SUPERFAMILY | Leucine zipper domain | 91 | 137 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1231 | 256 | Gene3D | - | 78 | 155 | - | - | |
Cone12ag1231 | 256 | CDD | bZIP | 99 | 146 | - | - | |
Cone12ag1231 | 256 | SMART | brlzneu | 86 | 154 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1231 | 256 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
Cone12ag1231 | 256 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 89 | 136 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag1231 | 256 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 183 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) | |
Cone12ag1231 | 256 | MobiDBLite | consensus disorder prediction | 74 | 110 | - | - | |
Cone12ag1231 | 256 | Pfam | Basic region leucine zipper | 88 | 144 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1231 | Cone-Chr12:9551826 | Cone8ag1283 | Cone-Chr8:10565509 | 2.51E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44522 | PF03094 | Mlo | 6.10E-210 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag1231 | K25785 | - | csv:101208161 | 287.73 |