Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1232 ATGGCCGATGAGCAAGACGCGAGTAATGATCAGGTAGTAGAGGAGGAGTACACCGTCTGGAAGAAGAACACTCCATTTCTGTACGATTTCATCATCTCCAAACCTCTCGAATGGCCATCTCTCACCGTCGATTGGGTCCCGCTGGTTCCACAGCCCCATCACTCAGTTTCTTCTCTCGCCACCCACAAGCTCGTTCTCGGAACTCACACCTCTGATGGAATTCCTAACTTCCTCATGGTTGCTGATGCCCTCTTACCTGTTGAACCTTCACATACCCAGATCGATGATAGTGGTGAAGATCCCATCATCCCTAAGGTAGAGATAAACCAGAAAATACGTGTTGATGGGGAGGTGAATAGAGCTCGTTGCATGCCTCAAAACCCACTAATTATTGGTGCAAAGACGAGCGGGTCTGAGGTATATGTGTTTGATTGCGCCAAACAAGGGGAGAAGTCTCATGGAGGTGAGTGTGATCCTGATTTGAAACTAAAGGGCCATGAGCAAGAAGGTTATGGATTGTCTTGGAGCCCCTTCAAGGAGGGTTATCTATTGAGTGGCTCACATGATCATAAGATATGTTTGTGGGATGTTTCTGCTGTGGCTCAAGAGAAGGTGCTTGATGCATTACATGTTTATGAGGCTCATGAAAGTGTAGTAGGAGACGTGGCTTGGCATTTGAAGAATGAGAACTTGTTTGGATCTGTGGGAGATGATTGTCAATTGATAATATGGGACCTGCGCGCTAACAAAACCCTGCATTCGCTCAAAGCCCATGAAAAGGAGGTAAATTACATCTCATTTAACCCATATAACGAATGGATCCTAGCTACGGCTTCTTCAGACACTACAGTTGGTCTTTTTGACCTGCGGAAACTGACTGAGCCATTGCACGTTTTAAGCAGTCACACAGAGGAGGTATTCCAGGTAGAATGGGATCCAAATCATGAAACTGTGTTAGCCTCTTCTGCTGATGATAGAAGATTGATGGTGTGGGACCTTAACAGAATTGGGGACGAGCAAGAGGGAGATGCAGAAGATGGGCCACCGGAGCTTCTGTTTTCTCATGGGGGTCACAAAGCTAAGATCTCAGACTTTTCATGGAACAAGAATGTGCCATGGCTCATTTCAAGTGTTGCCGAGGATAATACTGTTCAAGTATGGCAAATGACTTCTAGTCTTTATTCCAATGACGATTGA 1197 45.78 MADEQDASNDQVVEEEYTVWKKNTPFLYDFIISKPLEWPSLTVDWVPLVPQPHHSVSSLATHKLVLGTHTSDGIPNFLMVADALLPVEPSHTQIDDSGEDPIIPKVEINQKIRVDGEVNRARCMPQNPLIIGAKTSGSEVYVFDCAKQGEKSHGGECDPDLKLKGHEQEGYGLSWSPFKEGYLLSGSHDHKICLWDVSAVAQEKVLDALHVYEAHESVVGDVAWHLKNENLFGSVGDDCQLIIWDLRANKTLHSLKAHEKEVNYISFNPYNEWILATASSDTTVGLFDLRKLTEPLHVLSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQEGDAEDGPPELLFSHGGHKAKISDFSWNKNVPWLISSVAEDNTVQVWQMTSSLYSNDD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9553744 9555945 - Conep12aG0127200.1 Cone12ag1232 450076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1232 398 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 15 86 IPR022052 -
Cone12ag1232 398 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Cone12ag1232 398 Pfam WD domain, G-beta repeat 351 387 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 Pfam WD domain, G-beta repeat 294 332 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 Pfam WD domain, G-beta repeat 250 288 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 Pfam WD domain, G-beta repeat 162 196 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 ProSitePatterns Trp-Asp (WD) repeats signature. 183 197 IPR019775 -
Cone12ag1232 398 SMART WD40_4 156 196 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 SMART WD40_4 348 388 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 SMART WD40_4 205 245 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 SMART WD40_4 248 288 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 SMART WD40_4 292 332 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Cone12ag1232 398 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Cone12ag1232 398 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Cone12ag1232 398 Gene3D - 1 398 IPR015943 GO:0005515(InterPro)
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 198 - -
Cone12ag1232 398 SUPERFAMILY WD40 repeat-like 110 390 IPR036322 GO:0005515(InterPro)
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 205 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 334 - -
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 334 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 FunFam WD-40 repeat-containing protein MSI1 1 398 - -
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 290 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 PANTHER WD40 REPEAT FAMILY 8 397 IPR050459 GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006355(PANTHER)|GO:0031491(PANTHER)|GO:0042393(PANTHER)
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 254 IPR001680 GO:0005515(InterPro)
Cone12ag1232 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 391 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1232 K10752 - - cit:102628661 663.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1232 Cone-Chr12:9553744 Cone7ag0443 Cone-Chr7:2000311 1.45E-109 dispersed
Cone8ag1285 Cone-Chr8:10568225 Cone12ag1232 Cone-Chr12:9553744 2.75E-29 transposed
Cone12ag1232 Cone-Chr12:9553744 Cone8ag1284 Cone-Chr8:10567426 4.97E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33