Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1235 ATGGCGAAGCCACTGCAAATTGAGGTGTGGAACCCAAATGGGAAATACAGGGTCGTTAGCACAAAGCCCATGCCTGGAACCCGCTGGATCAATCTCCTTGTCGAGCAAGATTGCCGGGTCGAAATTTGTACCCAGAAGAAAACTATACTTTCTGTTGAAGATATTATTGCTCTGATCGGTGATAAGTGCGATGGAGTAATCGGACAGTTGACAGAAGATTGGGGAGAGGCACTGTTCTCAGCTCTGAGTAGAGCAGGAGGGAAAGCCTTCAGTAATATGGCCGTTGGTTATAATAATGTTGACGTTAATGCAGCTAATAAGTATGGTGTTGCTGTCGGAAATACTCCAGGGGTACTTACAGAAACTACTGCTGAGTTGGCGGCTTCGCTTTCTTTAGCAGCTGCTAGAAGAATTGTGGAAGCAGATGAGTTTATGAGGGCTGGATTATATGATGGATGGCTCCCTAATTTGTTTGTTGGGAACTTGCTGAAGGGACAGACAGTTGGTGTGATTGGAGCTGGTCGAATTGGATCGGCTTATGCCAGAATGATGATTGAAGGGTTCAAAATGAACCTGATTTATTTTGATCTGTATCAATCTACACGGCTAGAAAAGTTTGTCACAGCTTATGCTGAGTTCTTGAAAGCCAATGGTGAACAGCCTGTGACATGGAGAAGAGCTTCTTCTATGGAAGAGGTTCTCCGAGAAGCCGATGTGGTAAGTCTTCATCCGGTGTTGGATAAAACCACTTACCACCTTGTCAACAAAGAGAGTCTCGCATTAATGAAGAAGGAAGCGATACTTGTTAACTGTAGCAGGGGGCCAGTCATCGATGAAGTAGCTCTCGTGGAGCATTTGAAAGAGAATCCTATGTTTCGGGTTGGTCTTGATGTTTTTGAGGACGAGCCATACATGAAACCGGGTCTCGCTGATATGAAGAATGCTGTTGTCGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGCGAAGGAATGGCAACACTAGCTGCTCTGAATGTCCTGGGGAAGATCAAGGGATATCCAGTTTGGTCCGATCCAAATCGGGTCGAACCATTTCTTAACGAGAAGGCTAGGCCTCCTGCCGCATCTCCTAGCATTGTCAATGCAAAATCCTTAGACGATGTGATCCCTTTGCCGAACGTGAAAGGCAACATCTTCGCGTTGGTTGTGGAGTTATGCAAGAAGCACTCTGAAGCCAAAACTGAAGTCGAATTGGCGGCGATCAAAAGTTGGGAAGATGAGTTTGTTCATGTCGACATGCCCATCTCTTTGAACTTATCTTGGTTAGCGGCGAACTATTTGAACATGAAAGCGCTTCTAGACCGAACATGTCAGGCTGTGGCCTATATAATAAAGGATTCTAGCGTTGAGAAAGTACGATCAATATTTGACATCGATAATGATTATTCTCCAGAGGAAGAAGCAAGGAAACGGAGTGAGAATCTACGGGCATTCGAGAGGATATATGATAACTAA 1497 45.09 MAKPLQIEVWNPNGKYRVVSTKPMPGTRWINLLVEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGEALFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMIEGFKMNLIYFDLYQSTRLEKFVTAYAEFLKANGEQPVTWRRASSMEEVLREADVVSLHPVLDKTTYHLVNKESLALMKKEAILVNCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFLNEKARPPAASPSIVNAKSLDDVIPLPNVKGNIFALVVELCKKHSEAKTEVELAAIKSWEDEFVHVDMPISLNLSWLAANYLNMKALLDRTCQAVAYIIKDSSVEKVRSIFDIDNDYSPEEEARKRSENLRAFERIYDN 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9565752 9568831 + Conep12aG0127500.1 Cone12ag1235 450079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1235 498 Gene3D - 18 346 - -
Cone12ag1235 498 Gene3D Potassium Channel Kv1.1; Chain A 367 493 IPR011333 -
Cone12ag1235 498 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 64 346 IPR050223 GO:0005829(PANTHER)|GO:0008465(PANTHER)|GO:0016618(PANTHER)|GO:0030267(PANTHER)
Cone12ag1235 498 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 347 IPR006139 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone12ag1235 498 SUPERFAMILY Skp1 dimerisation domain-like 415 488 IPR036296 GO:0006511(InterPro)
Cone12ag1235 498 Gene3D - 118 321 - -
Cone12ag1235 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Cone12ag1235 498 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Cone12ag1235 498 SMART skp1_3 363 443 IPR001232 GO:0006511(InterPro)
Cone12ag1235 498 Pfam Skp1 family, dimerisation domain 444 488 IPR016072 GO:0006511(InterPro)
Cone12ag1235 498 CDD GDH 16 346 - -
Cone12ag1235 498 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Cone12ag1235 498 FunFam Glycerate dehydrogenase HPR, peroxisomal 118 321 - -
Cone12ag1235 498 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 129 322 IPR006140 GO:0051287(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1235 K15893 - - mdm:103420047 703.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1235 Cone-Chr12:9565752 Cone4ag1999 Cone-Chr4:13964185 9.25E-25 wgd
Cone12ag1235 Cone-Chr12:9565752 Cone7ag1905 Cone-Chr7:12210370 3.28E-24 wgd
Cone12ag1235 Cone-Chr12:9565752 Cone8ag1289 Cone-Chr8:10578260 1.10E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32