Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1237 ATGTCGAAAGAAGAAGGGGCCGAAGGAGCAAGACACCATGGCAAGGACTACGTGGACCCACCACCAGCACCACTTCTTGACTTCGCTGAGCTCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCTGAGTTCATCGCCACCCTCCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGAAACAACAAGCAGAAAGACGCCTGTGGCGGCGTCGGAATCCTCGGCATAGCATGGGCTTTTGGGGGAATGATCTTCGTCCTTGTTTACTGCACTGCCGGCATTTCTGGTGGTCATATCAACCCAGCCGTGACGTTCGGTCTGTTCCTAGCGAGAAAAGTGTCGCTGATCCGCGCGGTGGCGTACATGGTGGCTCAGTCGCTAGGAGCCATCGCCGGCGTAGGGCTTGTCAAAGCTTTCATGAAGAGCGCGTACAACGCAAATGGCGGTGGCGCGAATCTCATCTCTCCTGGCTACAGCAAGGGCACTGCTCTTGGCGCTGAGATTATCGGAACCTTTGTTCTAGTCTACACTGTTTTCTCAGCCACTGACCCAAAGAGAAGCGCTCGCGACTCGCACGTGCCCGTCCTGGCCCCACTACCCATCGGCTTCGCCGTGTTCATCGTCCACTTGGCTACCATTCCGATAACTGGAACTGGTATTAACCCTGCCAGAAGCTTCGGTGCTGCTGTGATCTACAACCACGAGAAAGTTTGGGACGAGCACTGGATCTTCTGGGTCGGTCCGTTCGTGGGAGCGTTGGCTGCGGCGGCGTACCACCAGTATATCCTCAGAGCGGCAGCGATTAAGGCGTTGGGATCTTTCCGGAGCAACCCTAGCAACTAA 843 56.23 MSKEEGAEGARHHGKDYVDPPPAPLLDFAELKLWSFYRALIAEFIATLLFLYITVATVIGNNKQKDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQSLGAIAGVGLVKAFMKSAYNANGGGANLISPGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNHEKVWDEHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9577496 9578752 + Conep12aG0127700.1 Cone12ag1237 450081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1237 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Cone12ag1237 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cone12ag1237 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cone12ag1237 280 Pfam Major intrinsic protein 30 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1237 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cone12ag1237 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1237 Cone-Chr12:9577496 Cone5ag1231 Cone-Chr5:5673499 1.37E-160 dispersed
Cone12ag1237 Cone-Chr12:9577496 Cone8ag1291 Cone-Chr8:10585800 8.14E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1237 K09872 - cit:102624436 505.753