Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1239 ATGGAAAGTGGGCAACAGGACACAGTCCATAAAACAAATGACTCTACCACGAGTTCACTTGATAGTATTTTGAACCGAGACGACTCTACTACAAGTGCTTATGTTAGTGAACCAAATGTAAATTGTGATAACAATATTTCTAACAGAGTCAACAAGGTGGTGAGTGAAAAACAGAATATTCCCTCTATTTACAGGCAAGATGTTGTGAGGAGCAAGCAGAATGGCATGATTGGGATTGTGACTGAAGTTGCTGGAGATGCAGATTCAGATGGTTCAACAGATGATGACGAGGATGATGAGGATGACGATGATGAGGATGACGATGATGAGGATGACGATGATGAAGATGATGACGAGGATGATGATGATGATGATGAAGGAGCCGAAAAGGGTGAACTTGGGGAAGATAATCTTTGTAATGGCAATGATGATTCAAAAACAAGCACTGGTAGTAATAAGGATGCTCGCCTCTCTCCTGATCAAGTTCGAGTTCTTTGGAAGGATGAAAGTGAGTCAACTCCAAATGTTAGTGATTTGGTAGTTATTGATCGGGCATTCTTACATGGGGATTATGTTGCTTCCGCCACCGACCCAACTGGGCAAGTAGGTATTGTTGTAGATGTGAACATATCTGTCGACTTGCTTTCACCTGATGGTTCTATCATAGAAGATGTGTCATCCAAAGACTTAAAGCGTGTGAGAGATTTCGCTGTGGGTGATTATGTGGTCCTTGGTCCGTGGCTCGGTAGAATTGATGATGTCCTAGATAATGTGACGGTGTTTTTTGATGATGGATCCATGTGTAAAGTTACAAAAGCAGAGCCTTTGCATCTCAAACCAATTTCCAAGAATATCCTTGACGATGTGAATTTTCCTTACTACCCTGGACAACGTGTGAGGGCAAGCTCATCATCAGTTTTCAAAAATGCTAAATGGATTTCTGGTAGTTGGAGACACAACAGGTTGGAAGGTACTGTGGCTAAAGTTACAGTTGGTTCAGTATTTATCTATTGGATAGCATCTGCTGGCTATGGGCCAGATTCTTCTACTGCCCCTGCAGAAGAACAAAGTCCAAAGAATTTAAAGTTGTTGTCCTGTTTTGCTCATGCTAATTGGCAACTGGGTGACTGGTGTCTTTTTCCCTCTTTATCGTCCTGGAATGGATTGGACAAGGATTTATCAAAGGTGGGACTTCATGATTCAGTTGAAAACGAATTAGATCTTTTGCAGACTGGGATTGGTGGTGATTTAGAAGAAGTCTCAGTAGATGAGAGTGGGAATAATGAATACATGGATCTTGAGCCAATGGCTGCAACAGAAGTCAATGATCAAAATATTGAAAGTAATATCTCGCCTGAATCTAGCTCCTGTGCGAGTTCTTTGACGGTCTCAAAGGAGCCTGGTCATGAAAGTTGGCCTCTTCATCGCAAAAGAATCCGTAAAGTCGTGGTTCGGAGAGATAAGAAGGCTCGAAAGAAAGGGGAGAATTTTGAAAGAGCCCTTTTAATCATCAATACTACATCAAAAATCGATGTTGCATGGCAAGATGGTAATATAGGACGAGCTCTCAATTCAACAAGTTCGATTCCAATTAATAATCCCGGTGATCATGAATTTGTTGCTGAACAATATGTGGTGGAGAAAGCCTCCGACGATGATGAGAATATTGGTGAAGGTAAGCGAGTTGGGGTTGTGAAAAGTGTTAATGCCAAAGAACGGACAGCTTCAGTGAGATGGTTAAGGCCAGTTGTTAGAGCAGAGGATCCTAGAGAGTTCAATGAGGAGGAAATTGTTAGTGTATATGAATTGGAGATGCATCCTGATTATGAGTATTGTTATGGGGATGTGGTTGTGCGGTTGTCACCAGTGTCCGTTTTCACAGAAACAGATCCTGGTGGAGACTCTGCTGAAGAATCAAAGAACCAAATTGGATCTGATGAGGTCAAACATGATGTAAAGAAACATCCAGGTTGTATGAAAGTAAAGGATTTATCTGACAATAAGGCTTTTCTTGAGGCCGATCTCTCTTGGGCAGGCAATATAACTGGACTTAAGAATGGTGATATTGAAGTTACTTGGGCAGATGGGATGGTTTCAACGGTTGGTCCTCAAGCAATTTATGTTGTTGATCGAGATGATGACGACGAGTCAATTGGTGCTGGAAGTGACATTAATGATGATGCTGCTAGTTGGGAAACTGTCAATGACGAAGAAATGGATTCATTTGAGAATTCCAATGAAGATATTGAGCTGCAAGATGCCACTGATGCGAAATCTGAGGTGGAGGATAATGGAGAAATGAATTCTAGCATAAATCCAGCATTCTCTGTTCCATTGGCTGCAATGCGTAAACTAAACTCTGAAGGAATGATAGATATTTCTGAAGAACAGAGCTCCAATGAGGAGTCCACCTCTCACCACCAGGATATTGCTGATAGTTCTAGACTGAAAAATGATAACAGAAAAGGAGAAGAACATGTTACTGCAGAGAACTTAGACGTGTTGGAAGCAGCTGAAGCTTTATGTAGTATGACTTCCAAAGATCTTGTTTGTAGCTTCAAACACTTTGATATCGCTAAAGATCCTTTGGACCATCACTTTCATGGAAATGAACAGAGTAACAATGGAAGGAAGTGGTTCAAGAAGGTCCAGCAAGATTGGAACATCCTTCAGAATAACCTTCCCGACACAATCTATGTTCGGGTCTATGAAGATCGGGTGGATCTTTTAAGGGCTGTCATAATAGGTGCATATGGGACACCGTACCAAGATGGTCTCTTCTTCTTTGATTTCCACCTTCCACCAGATTATCCTGATGTTCCACCATCAGCATACTATCATTCAGGTGGGTGGCGGATAAATCCGAATTTGTATGAGGAAGGCAAGGTGTGCCTTAGCCTACTAAATACTTGGACTGGCAGGGGGAATGAAGTTTGGGATCCAAAGTCCTCTAGCATCCTCCAAGTACTTGTTTCTCTTCAAGGGCTAGTTTTGAACAGTAAGCCGTATTTCAATGAAGCTAGTTATGATAAACAGGTTGGTACAACTGAAGGAGAAAAAAATTCCTTGTCGTATAATGAGAATACTTTCTTACTCAGTTGTAAGACAATGATGTATCTCATGCGGAAGCCCCCTAAGGACTTTGAAGAGCTTATCAAAGACCATTTCAGAAATCGAGGTTATTACATTCTCAAGGCATGTGATGCATATATGAAAGGTCAACTAATTGGATCTCTGAACGGAGATGCTTCTATAACTGATAGTGGTGAGGTTAACTCTACATCAGTTGGTTTTAAGTTGATGTTGGCAAAGATTGTTCCAAAGCTTTTATCGGCATTGAGCGAAGTTGGAGTTGATTGTCAAGAATTTAAACATCTTCAACAGACATAG 3390 41.18 MESGQQDTVHKTNDSTTSSLDSILNRDDSTTSAYVSEPNVNCDNNISNRVNKVVSEKQNIPSIYRQDVVRSKQNGMIGIVTEVAGDADSDGSTDDDEDDEDDDDEDDDDEDDDDEDDDEDDDDDDEGAEKGELGEDNLCNGNDDSKTSTGSNKDARLSPDQVRVLWKDESESTPNVSDLVVIDRAFLHGDYVASATDPTGQVGIVVDVNISVDLLSPDGSIIEDVSSKDLKRVRDFAVGDYVVLGPWLGRIDDVLDNVTVFFDDGSMCKVTKAEPLHLKPISKNILDDVNFPYYPGQRVRASSSSVFKNAKWISGSWRHNRLEGTVAKVTVGSVFIYWIASAGYGPDSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLFPSLSSWNGLDKDLSKVGLHDSVENELDLLQTGIGGDLEEVSVDESGNNEYMDLEPMAATEVNDQNIESNISPESSSCASSLTVSKEPGHESWPLHRKRIRKVVVRRDKKARKKGENFERALLIINTTSKIDVAWQDGNIGRALNSTSSIPINNPGDHEFVAEQYVVEKASDDDENIGEGKRVGVVKSVNAKERTASVRWLRPVVRAEDPREFNEEEIVSVYELEMHPDYEYCYGDVVVRLSPVSVFTETDPGGDSAEESKNQIGSDEVKHDVKKHPGCMKVKDLSDNKAFLEADLSWAGNITGLKNGDIEVTWADGMVSTVGPQAIYVVDRDDDDESIGAGSDINDDAASWETVNDEEMDSFENSNEDIELQDATDAKSEVEDNGEMNSSINPAFSVPLAAMRKLNSEGMIDISEEQSSNEESTSHHQDIADSSRLKNDNRKGEEHVTAENLDVLEAAEALCSMTSKDLVCSFKHFDIAKDPLDHHFHGNEQSNNGRKWFKKVQQDWNILQNNLPDTIYVRVYEDRVDLLRAVIIGAYGTPYQDGLFFFDFHLPPDYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEASYDKQVGTTEGEKNSLSYNENTFLLSCKTMMYLMRKPPKDFEELIKDHFRNRGYYILKACDAYMKGQLIGSLNGDASITDSGEVNSTSVGFKLMLAKIVPKLLSALSEVGVDCQEFKHLQQT 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9584266 9590283 - Conep12aG0127900.1 Cone12ag1239 450083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1239 1129 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 58 1125 - GO:0061631(PANTHER)
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 140 156 - -
Cone12ag1239 1129 Gene3D Ubiquitin Conjugating Enzyme 844 1111 IPR016135 -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 795 824 - -
Cone12ag1239 1129 Pfam Ubiquitin-conjugating enzyme 883 1014 IPR000608 -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 740 772 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 449 466 - -
Cone12ag1239 1129 FunFam Probable ubiquitin-conjugating enzyme E2 23 843 1117 - -
Cone12ag1239 1129 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 878 1038 IPR000608 -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 449 469 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 799 824 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 628 647 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 88 131 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 1 45 - -
Cone12ag1239 1129 MobiDBLite consensus disorder prediction 82 156 - -
Cone12ag1239 1129 CDD UBCc 881 1031 IPR000608 -
Cone12ag1239 1129 SUPERFAMILY UBC-like 864 1045 IPR016135 -
Cone12ag1239 1129 SMART ubc_7 881 1038 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1239 K10581 - - vvi:100258896 1408.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1239 Cone-Chr12:9584266 Cone6ag1016 Cone-Chr6:5680063 5.45E-196 dispersed
Cone12ag1239 Cone-Chr12:9584266 Cone8ag1294 Cone-Chr8:10596994 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41