Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1240 ATGACCCAAGACGTTGAAATGAAAGAGCTCCCAGCTCCTTCCAATTCTGCTTCTTCAAATTCTCCTTCAACTTTACACCATTTGAAGGAGATTGCATCACTCATCGAGACTGGTGCATATACCAAGGAGGTTCGGCGAATTTTTCGTGCGATCCGTCTGACCATGGCTTTAAGAAAGAAGCTGAAGGCACCTGTGCTTTCCGCATTCTTGAATTTTGCTCTCACTCCAGGATCTGAGGTGCATTCTAGGTTATCCTGCTATCTTCCGAAGGAAGATGATCATGACATGGATGTCGACAGTGCAACATCTGCAAATCAAGCGTCAATAAAACACCCTTATCCAGAACTGGAGATATACTGCTACTTGGTTGTGCTGATATTTCTGATCGACCAAAAGAGGTACACTGAGGCTAAGGCTTGTGCTTCAGCAAGCATTTCTCGATTGAAGAACATCAACAGAAGAACCGTTGATGTACTTGCATCAAGGCTCTACTACTATTATTCATTAAGCTATGAACTTACCGGCGATCTTGCTGAAATTAGGGGTAACCTCCTTTCCCTCCATCGTATTGCAACCTTACGCCATGATGAGCTGGGACAGGAAACACTTCTCAACCTACTACTTCGAAATTACCTCCACTACAATTTGTATGATCAAGCAGAGAAGTTGAGGTCCAAGGCTCCCCGATTTGAGGCTCACTCTAATCAGCAGTTTTGTCGCTATCTGTTTTACCTCGGAAAGATCAGGACAATCCAATTGGAGTACACAGATGCAAAAGAGTCCCTTCTGCAGGCTGCTCGGAAAGCCCCTGCTGCTGCCCTTGGTTTTCGTGTTCAATGCAACAAATGGGCAGTCATTGTTCGCTTGCTTCTTGGAGAAATCCCCGAGAGGACTGTTTTCATGCAGAAAGGCATGGAGAAGGCTTTGAAGCCCTACTTTGAGCTTACTAATGCTGTCCGTATTGGAGATCTAGAGCTTTTCAGAACTGTAGCTGAGACTTTCTCTAGTACTTTCAGCTCAGATGGGACCAAGAATCTGATTGTCCGGCTGCGCCACAATGTCATTAGAACAGGGCTACGCAACATTAGCATCTCTTATTCCCGTATTTCTTTGGCTGATGTGGCAAAAAAGCTGAGGTTGGACTCTCCAAACCCCGTTGCTGATGCTGAGAGTATTGTGGCCAAGGCAATTCGAGATGGAGCAATTGACGCCACATTGGATCATGCCAATGGATGGATGGTCTCAAAGGAGACTGGAGATATCTACTCTACAAATGAGCCTCAAATTGCATTCAACTCTAGGATTGCCTTCTGCCTCAATATGCACAACGAGGCGGTTCGTGCACTTAGGTTCCCACCCAACGACCATAAAGAAAAGGAAAGTGCTGAGAAGAGGAGGGAGAGGCAACAGCAGGAGCAAGAGCTTGCAAAACATATAGCCGAAGAGGATGATGATGATTTTTGA 1464 45.56 MTQDVEMKELPAPSNSASSNSPSTLHHLKEIASLIETGAYTKEVRRIFRAIRLTMALRKKLKAPVLSAFLNFALTPGSEVHSRLSCYLPKEDDHDMDVDSATSANQASIKHPYPELEIYCYLVVLIFLIDQKRYTEAKACASASISRLKNINRRTVDVLASRLYYYYSLSYELTGDLAEIRGNLLSLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPAAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALKPYFELTNAVRIGDLELFRTVAETFSSTFSSDGTKNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNDHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9590744 9593938 - Conep12aG0128000.1 Cone12ag1240 450084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1240 487 Gene3D - 243 437 - -
Cone12ag1240 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Cone12ag1240 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Cone12ag1240 487 MobiDBLite consensus disorder prediction 450 487 - -
Cone12ag1240 487 Pfam PCI domain 336 416 IPR000717 -
Cone12ag1240 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Cone12ag1240 487 MobiDBLite consensus disorder prediction 450 480 - -
Cone12ag1240 487 SUPERFAMILY Winged helix DNA-binding domain 347 421 IPR036390 -
Cone12ag1240 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 483 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cone12ag1240 487 MobiDBLite consensus disorder prediction 1 23 - -
Cone12ag1240 487 Coils Coil 454 481 - -
Cone12ag1240 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cone12ag1240 487 SMART PCI/PINT associated module 174 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1240 K03033 - - vvi:100264130 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1240 Cone-Chr12:9590744 Cone8ag1295 Cone-Chr8:10602721 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1240 Cone8ag1295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65