Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1242 ATGGATTTTGATGAGTATGAGTATTTAGAGAAAACAGTAGAGAACCCCAAGCCACAAAAAGTAAAGGAAACTCCTGTTGGCGGTGATGAAACTGTGAAATCTGGTGATAGAGAACGTAGTAGAAGTTCAAAGCATAAGATTGATGAGAAAGATGATGGGGACTGCCGTTCATCTCGTAGCTTACAGTTCAGAGATAGCGAAAGGCATCATCAAAGAAGTAGCAAGGGATATAGGGATAGGGATAAGGAGGAGAGAAACCGAAGGGACAAAGATAGAGACAGAGACAGGAATGGTGACAGAGAGCGGGGTCATGACAGAGACAGAGACCGGAGAGAGCGTGGTAGAGAGGCTGAAAGAGAGAGGGAGAGAGAATGGCCACATCGAAGCAGGAGTCGATTGGAAAGGCATCGCAATGATCGCGATGAAAGAGAAAGAGAGAGGAACCTAGACGGGGATAATAGAGAGAAAGAAAGCGAGGATTTAAGAGAGAGAGACAAAGGAAGCAGACAAAACAAAGAGAAAAAGGACGAAGCGAAAGAACCGGAGGCTGATCCTGAACGTGATCAAAGGACAGTATTTGCCTATCAGATTTCTTTGAAGGCAACTGAAAGGGATGTGTATGAATTCTTCTCAAGGGCAGGAAAGGTCCGAGATGCACGCCTTATACTGGATCGCAATTCAAGACGCTCTAAAGGATGTGGGTATATTGAATTCTTTGATGCTATGTCAGTACCTATGGCAATAGCTCTTTCTGGTCAGCCACTTCTTGGTCAACCTGTGATGGTAAAACCATCAGAAGCTGAGAAGAACCAAGTTCAGTCAACAACTGCAGCCGGTGTGTCAGGGCTTGCAGGTCCTTCAGGTGCTGCCAGAAAGTTGTATGTCGGCAATTTGAATACCAACATAACCGAAGATAATCTTCGTCAAGTTTTTGAAGCATTTGGTTCTGTGGAGCTGGTTCAATTACCTCTTGATGAGACTGGGCATTGCAAAGGCTTTGGTTTTGTTCAGTTCTCACACCTTGAAGATGCTAAAAATGCTATGAGTTTGAACGGTCAATTGGAGATTGCAGGTCGGGCAATAAAGGTGTCTGCTGTGACTGATCAACTTGGAATGCAAGATCTTGGAACAATTACTGCTGTTGATCTTGACGACGAGGAAGGCGGTGGCTTGTCTCTAAATGCACGTTCTCGAGCATTTCTGATGCAGAAGTTGGATCGTAGTGGCACTGCATCTAGTATTACGGGTTCTTTAGGAATGCCTGCTTTCAATAGCTCTGGCCTTACTCTGCCAATGCCACCAAACATTGGAGCTGCTCCACTGAGTACTCTCTTTCCTGCTCCTCTTGCTTCCATTCCTGGTTTTCCCGGACTTGGTGGTATAGGTGTTCAGATTCCCACTTCTTCTGCTACATTACTCGTCACAATTGGTACTCCTAGTGAATGTTTACTATTGAAGAACATGTTTGATCCGGAAGTTGAGTTGGAACCAAATTTTGACTTGGATATCAAAGATGACGTTGAAGAGGAATGTTCTAGGTTTGGGAAACTGAAACATATATATGTGGATAAGAACACTGCTGGTTTCGTATACTTGAGATTCGAGAACTCAGAATCTGCCGTAAACTCGCAACGTGCTCTCCATGGGAGGTGGTTTGCTGGGAAGATGATCACAGCAACCTTCATGGACTGCCAGTGTTACGAAGCTAGATTCCCAGACAGTGGGCTGGTGGATTCGTAG 1740 44.89 MDFDEYEYLEKTVENPKPQKVKETPVGGDETVKSGDRERSRSSKHKIDEKDDGDCRSSRSLQFRDSERHHQRSSKGYRDRDKEERNRRDKDRDRDRNGDRERGHDRDRDRRERGREAEREREREWPHRSRSRLERHRNDRDERERERNLDGDNREKESEDLRERDKGSRQNKEKKDEAKEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDARLILDRNSRRSKGCGYIEFFDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNQVQSTTAAGVSGLAGPSGAARKLYVGNLNTNITEDNLRQVFEAFGSVELVQLPLDETGHCKGFGFVQFSHLEDAKNAMSLNGQLEIAGRAIKVSAVTDQLGMQDLGTITAVDLDDEEGGGLSLNARSRAFLMQKLDRSGTASSITGSLGMPAFNSSGLTLPMPPNIGAAPLSTLFPAPLASIPGFPGLGGIGVQIPTSSATLLVTIGTPSECLLLKNMFDPEVELEPNFDLDIKDDVEEECSRFGKLKHIYVDKNTAGFVYLRFENSESAVNSQRALHGRWFAGKMITATFMDCQCYEARFPDSGLVDS 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9598321 9602326 - Conep12aG0128200.1 Cone12ag1242 450086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1242 579 Gene3D - 476 578 IPR012677 -
Cone12ag1242 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 564 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 MobiDBLite consensus disorder prediction 1 189 - -
Cone12ag1242 579 SUPERFAMILY RNA-binding domain, RBD 183 270 IPR035979 GO:0003676(InterPro)
Cone12ag1242 579 Gene3D - 127 275 IPR012677 -
Cone12ag1242 579 Gene3D - 276 370 IPR012677 -
Cone12ag1242 579 CDD RRM1_RBM39_like 191 263 - -
Cone12ag1242 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 368 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 574 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)|GO:1990446(PANTHER)
Cone12ag1242 579 FunFam Splicing factor, CC1-like protein 476 575 - -
Cone12ag1242 579 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 383 499 IPR029123 -
Cone12ag1242 579 SMART rrm2_1 292 364 IPR003954 GO:0003676(InterPro)
Cone12ag1242 579 SMART rrm2_1 487 560 IPR003954 GO:0003676(InterPro)
Cone12ag1242 579 FunFam CC1-like, splicing factor 286 395 - -
Cone12ag1242 579 CDD RRM2_RBM23_RBM39 293 369 - -
Cone12ag1242 579 SUPERFAMILY RNA-binding domain, RBD 291 561 IPR035979 GO:0003676(InterPro)
Cone12ag1242 579 SMART rrm1_1 292 364 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 SMART rrm1_1 482 560 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 SMART rrm1_1 191 263 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 CDD RRM3_RBM39_like 480 563 - -
Cone12ag1242 579 MobiDBLite consensus disorder prediction 1 190 - -
Cone12ag1242 579 NCBIfam splicing factor, CC1-like family 64 573 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Cone12ag1242 579 Pfam RNA recognition motif 199 259 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 Pfam RNA recognition motif 505 557 IPR000504 GO:0003723(InterPro)
Cone12ag1242 579 Pfam RNA recognition motif 293 362 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1242 K13091 - - mdm:103440796 670.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1242 Cone-Chr12:9598321 Cone8ag0060 Cone-Chr8:309098 4.20E-162 dispersed
Cone12ag1242 Cone-Chr12:9598321 Cone8ag1298 Cone-Chr8:10614734 4.15E-300 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65