Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1243 ATGTTACCTGAGTTGATGAACTTTTTTGGGGCCTGTCTTGGGCCGAGGTCAGATCATACCGGTCCGGGTGCAGATTGCAGGGGTCGTCAAGACGGGCTCCTATGGTACAAAGACCATGGGCTTCACTCTAATGGTGAATTCTCAATGGCTGTTATCCAAGCCAACAATTTACTTGAGGACCAGAGCCAGATCGAGTCAGGCTGTTTGAGCTTGCTCGATTCTGGTCCCTATGGTACCTTTGTCGGTGTGTACGATGGGCATGGTGGGCCTGAGACTTCTCGCTATATCAATCATCACCTCTTCCAACATCTCAAAAGATTTGCTTCGGAACAACAATCGATGTCTCTGGAGGTAATAAGAAAGGCGTTTCAAGCCACGGAAGAAGGTTTTATATCTCTAGTTACTAAACAGTGGCCTGTCAAGCCGCAAATTGCAGCCGTTGGATCATGCTGTCTTGTTGGAGTGATTTGTGATGGGACACTTTTCATAGCCAATGCAGGCGATTCCCGTGCCGTATTGGGGAGAGCTGTAAAGGCAACAGGAGAGGTTCTGGCTGTTCAGTTATCAGTAGAGCACAATGCTAGGATAGAGTCTGTTAGAAAAGAGCTTCAATCTCTGCACCCGGACGACTCACAAATTGTCGTTTTGAAGCATAATGTATGGAGAGTAAAGGGTCTTATACAGATTTCTAGATCCATTGGTGATGTGTATTTGAAGAAGGCTGAGTTCAATAGGGAGCCTCTGTATGCTAAGTTTCGCCTTCGCGAGCCGATCAAAAGGCCAATCTTGAGCTCTGAACCCTCCGTTTCTACGATACAATTGCAGCCACACGACCAGTTTGTCATTTTTGCGTCAGACGGCCTTTGGGAACAGCTTAGCAATCAACAAGCAGTTGATATAGTTCAAAAGCATCCTCGTAAAGGAATTGCAAGGAAGCTTGTGAAAGCTGCCCTGCAAGAAGCAGCAGCAAAGAGAGAAATGAGGTATTCAGACTTGAAGAAGATAGACCGAGGTGTACGCCGTCATTTCCACGATGATATTACTGTGATTGTTGTGTTTCTGGACCCGAATCTTGTTTTTCAGACCAGTTCTGTCAGAAGCCAGAGTTTATCCGTGAAAGGGGGTGGAATCAACCTTCCTCCAAACACTCTAGCTCCTTGTAGTAACCAAGGAGACGATTGA 1182 46.36 MLPELMNFFGACLGPRSDHTGPGADCRGRQDGLLWYKDHGLHSNGEFSMAVIQANNLLEDQSQIESGCLSLLDSGPYGTFVGVYDGHGGPETSRYINHHLFQHLKRFASEQQSMSLEVIRKAFQATEEGFISLVTKQWPVKPQIAAVGSCCLVGVICDGTLFIANAGDSRAVLGRAVKATGEVLAVQLSVEHNARIESVRKELQSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKRPILSSEPSVSTIQLQPHDQFVIFASDGLWEQLSNQQAVDIVQKHPRKGIARKLVKAALQEAAAKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDPNLVFQTSSVRSQSLSVKGGGINLPPNTLAPCSNQGDD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9613531 9615882 + Conep12aG0128300.1 Cone12ag1243 450087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1243 393 ProSitePatterns PPM-type phosphatase domain signature. 80 88 IPR000222 GO:0043169(InterPro)
Cone12ag1243 393 Pfam Protein phosphatase 2C 79 323 IPR001932 -
Cone12ag1243 393 PANTHER PROTEIN PHOSPHATASE 42 353 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone12ag1243 393 SMART PP2C_4 40 352 IPR001932 -
Cone12ag1243 393 FunFam Phosphatase 2C family protein 35 364 - -
Cone12ag1243 393 ProSiteProfiles PPM-type phosphatase domain profile. 46 354 IPR001932 -
Cone12ag1243 393 SUPERFAMILY PP2C-like 54 355 IPR036457 -
Cone12ag1243 393 CDD PP2Cc 47 354 IPR001932 -
Cone12ag1243 393 Gene3D - 37 363 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1243 Cone-Chr12:9613531 Cone20ag0618 Cone-Chr20:3681526 9.37E-217 dispersed
Cone12ag0836 Cone-Chr12:7563588 Cone12ag1243 Cone-Chr12:9613531 6.25E-214 wgd
Cone12ag1243 Cone-Chr12:9613531 Cone8ag1300 Cone-Chr8:10628497 1.65E-262 wgd
Cone12ag1243 Cone-Chr12:9613531 Cone8ag0870 Cone-Chr8:8576582 5.06E-213 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1243 - - - 0.0