Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1250 ATGAGCCCGCCGCCTGAAGATGATCGGCGGTCCGGCAAGGTCAATAGTAAGAAATCCGGCCAAATGCGTTCCGGATTGTTGGGCAAGCCGGACGATGACGATGACGACACATTTTTTGACGAGGATCTTCCAGACAAGTACAAGAAGATCAAATTCAGTGCTCTGATTTTGATAGAATGGCTGAGCTTGATTTTAATCATCGGGGCTCTAATTTGCACTCTTTCAATCCCTGAATTGAGAACTCAAAGCCAATGGAAACTTAAACTATGGAAATGGGAAGTTTTAATTTTGTCCTTGATCTGTGGGAGATTAGTTTCAGGCTGGGGAACTAGGGTTATTGTGTTCTTTATAGAGAGAAATTTCCTTCTACGCAAAAGGGTTCTTTATTTCGTATATGGGATCAGAAATGCAGTACAGCGTTGTCTCTGGCTTTGTCTTGTTCTACTGACATGGACACTATTATTTGATGAAAAGGTAACAAACAGCAATGTGCTTAAATATGTGACCAAGATCTTGGTATGTCTGCTACTAGGTACTTTAGTCTGGTTACTGAAAACCCTGATGGTTAAGGTCTTAGCTTCTTCATTCCATGTAAATACTTATTTTGACAGAATCCAAGAATCTCTGTTCCACCAATACGTAATTGAAACTCTTTCGGGCCCACCATTGATCGAGATTCAGAAGATTGAGCAAGAAGAAGAAAGGCTTGCTGATGAGATTAGAAAGTTGCAAAATGCAGGGGCTAATATCCCGCCTGATCTTAAAGCGGACGCCTTTGGTACTGGTTCTAGGAATAGTGGAAGAGTGATTGGAAGTGTTAATGGAAGGATGAAGAGCTTGGGGCATTCCGGGAATTTTCCGAAGAAAGGAGATGATCAAGGGACAATAACAGTCGATCACTTGCATAGGTTGAGTCATAAGAATGTCTCGGCTTGGAACATGAAGAGGTTGATTAATATCGTCCGGCATGGTTCGCTTTCCACGCTTTATGAACAGATTCAAGGTTTTGGTTATGAGGATGAGTCTGATACTCGGATCAAAAGTGAACTCGAGGCTAAAGCTGCTGCAAAGAAAATCTTTCAGAATGTGGCTAGGCATGGTTTTAGGTATATATATATGGAGGATTTGATGCGTTTCTTGCAAGAAGAGGAGGCTTCGAAAACCATGAGCCTTTTCGAAGGAGCGTCCGAGAGTCATAGAATTAGCAAATCATCCTTGAAAAACTGGGTGTTTAATGCGTTTAGAGAGCGGCGAGCATTAGCTTTGACACTGAACGATACGAAAACAGCCGTGAACAAACTGAACCGAATTGTGAGCGCTATTGTTGCCATTGCTATATTAGTCATTTGGCTTCTTATACTCGGAATCGCCACCACCAAATTCCTCCTCTTTGTAAGCTCACAACTTGTCCTCGTCGCTTTTATCTTTGGAAACACCTGCAAGACCATTTTCGAATCCATTATCTTCTTGTTTGTGATCCATCCATATGACGTTGGCGATCGCTGTGAAATCGATGGAGCCGAGATGGTTGTAGAGGAAATGAACATCTTGACCACCATCTTTCTAAGAGGCGATAACTCGAGGATTCTATACCCTAACAGCCTCCTTTCAACCAAGGCTATTAACAACTTCTATCGTAGTCCTGATATGGGGGATGCAGTTGAATTCTGTGTTCATATATCTACTCCTGCAGAAAAGTTAGCCACGATGAGACACAGAATACTAAGTTATATTGAGAACAAGAAGGAGCATTGGTGTGCTTCACCTATGGTCATATTCAAGGACATAGAAGACTTGAATAAGGTGAGAATGGCGGTCTGGGTTCAGCATAGAATGAACTACCATGATGTAGGTGAAAGGTGGATCCGGAGAGCTGTTTTGGTTGAAGAGATGGTAAAGATTTTCCGAGAGCTCGACCTTCAGTACCGTCTTCTCCCGGTCGATGTTAATGTCCGAACATTACCACCCGGTGCACCCTCTACAGAATCGCTTCCACCTATCAATTGA 2007 42.65 MSPPPEDDRRSGKVNSKKSGQMRSGLLGKPDDDDDDTFFDEDLPDKYKKIKFSALILIEWLSLILIIGALICTLSIPELRTQSQWKLKLWKWEVLILSLICGRLVSGWGTRVIVFFIERNFLLRKRVLYFVYGIRNAVQRCLWLCLVLLTWTLLFDEKVTNSNVLKYVTKILVCLLLGTLVWLLKTLMVKVLASSFHVNTYFDRIQESLFHQYVIETLSGPPLIEIQKIEQEEERLADEIRKLQNAGANIPPDLKADAFGTGSRNSGRVIGSVNGRMKSLGHSGNFPKKGDDQGTITVDHLHRLSHKNVSAWNMKRLINIVRHGSLSTLYEQIQGFGYEDESDTRIKSELEAKAAAKKIFQNVARHGFRYIYMEDLMRFLQEEEASKTMSLFEGASESHRISKSSLKNWVFNAFRERRALALTLNDTKTAVNKLNRIVSAIVAIAILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFESIIFLFVIHPYDVGDRCEIDGAEMVVEEMNILTTIFLRGDNSRILYPNSLLSTKAINNFYRSPDMGDAVEFCVHISTPAEKLATMRHRILSYIENKKEHWCASPMVIFKDIEDLNKVRMAVWVQHRMNYHDVGERWIRRAVLVEEMVKIFRELDLQYRLLPVDVNVRTLPPGAPSTESLPPIN 668
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 9639328 9641710 - Conep12aG0129000.1 Cone12ag1250 450094
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1250 668 Pfam Mechanosensitive ion channel, beta-domain 483 544 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1250 668 MobiDBLite consensus disorder prediction 1 15 - -
Cone12ag1250 668 Coils Coil 226 249 - -
Cone12ag1250 668 MobiDBLite consensus disorder prediction 1 33 - -
Cone12ag1250 668 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 658 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cone12ag1250 668 SUPERFAMILY Sm-like ribonucleoproteins 485 544 IPR010920 -
Cone12ag1250 668 PIRSF Memb_At2g17000 2 666 IPR016688 -
Cone12ag1250 668 Gene3D - 495 544 IPR023408 -
Cone12ag1250 668 FunFam Predicted mechanosensitive ion channel 495 544 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1228 Cone-Chr10:9229824 Cone12ag1250 Cone-Chr12:9639328 9.67e-320 dispersed
Cone12ag1250 Cone-Chr12:9639328 Cone7ag0765 Cone-Chr7:4764957 2.81E-182 dispersed
Cone12ag1250 Cone-Chr12:9639328 Cone8ag1305 Cone-Chr8:10642036 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1250 K22048 - csv:101210264 890.567