Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1250 ATGAGCCCGCCGCCTGAAGATGATCGGCGGTCCGGCAAGGTCAATAGTAAGAAATCCGGCCAAATGCGTTCCGGATTGTTGGGCAAGCCGGACGATGACGATGACGACACATTTTTTGACGAGGATCTTCCAGACAAGTACAAGAAGATCAAATTCAGTGCTCTGATTTTGATAGAATGGCTGAGCTTGATTTTAATCATCGGGGCTCTAATTTGCACTCTTTCAATCCCTGAATTGAGAACTCAAAGCCAATGGAAACTTAAACTATGGAAATGGGAAGTTTTAATTTTGTCCTTGATCTGTGGGAGATTAGTTTCAGGCTGGGGAACTAGGGTTATTGTGTTCTTTATAGAGAGAAATTTCCTTCTACGCAAAAGGGTTCTTTATTTCGTATATGGGATCAGAAATGCAGTACAGCGTTGTCTCTGGCTTTGTCTTGTTCTACTGACATGGACACTATTATTTGATGAAAAGGTAACAAACAGCAATGTGCTTAAATATGTGACCAAGATCTTGGTATGTCTGCTACTAGGTACTTTAGTCTGGTTACTGAAAACCCTGATGGTTAAGGTCTTAGCTTCTTCATTCCATGTAAATACTTATTTTGACAGAATCCAAGAATCTCTGTTCCACCAATACGTAATTGAAACTCTTTCGGGCCCACCATTGATCGAGATTCAGAAGATTGAGCAAGAAGAAGAAAGGCTTGCTGATGAGATTAGAAAGTTGCAAAATGCAGGGGCTAATATCCCGCCTGATCTTAAAGCGGACGCCTTTGGTACTGGTTCTAGGAATAGTGGAAGAGTGATTGGAAGTGTTAATGGAAGGATGAAGAGCTTGGGGCATTCCGGGAATTTTCCGAAGAAAGGAGATGATCAAGGGACAATAACAGTCGATCACTTGCATAGGTTGAGTCATAAGAATGTCTCGGCTTGGAACATGAAGAGGTTGATTAATATCGTCCGGCATGGTTCGCTTTCCACGCTTTATGAACAGATTCAAGGTTTTGGTTATGAGGATGAGTCTGATACTCGGATCAAAAGTGAACTCGAGGCTAAAGCTGCTGCAAAGAAAATCTTTCAGAATGTGGCTAGGCATGGTTTTAGGTATATATATATGGAGGATTTGATGCGTTTCTTGCAAGAAGAGGAGGCTTCGAAAACCATGAGCCTTTTCGAAGGAGCGTCCGAGAGTCATAGAATTAGCAAATCATCCTTGAAAAACTGGGTGTTTAATGCGTTTAGAGAGCGGCGAGCATTAGCTTTGACACTGAACGATACGAAAACAGCCGTGAACAAACTGAACCGAATTGTGAGCGCTATTGTTGCCATTGCTATATTAGTCATTTGGCTTCTTATACTCGGAATCGCCACCACCAAATTCCTCCTCTTTGTAAGCTCACAACTTGTCCTCGTCGCTTTTATCTTTGGAAACACCTGCAAGACCATTTTCGAATCCATTATCTTCTTGTTTGTGATCCATCCATATGACGTTGGCGATCGCTGTGAAATCGATGGAGCCGAGATGGTTGTAGAGGAAATGAACATCTTGACCACCATCTTTCTAAGAGGCGATAACTCGAGGATTCTATACCCTAACAGCCTCCTTTCAACCAAGGCTATTAACAACTTCTATCGTAGTCCTGATATGGGGGATGCAGTTGAATTCTGTGTTCATATATCTACTCCTGCAGAAAAGTTAGCCACGATGAGACACAGAATACTAAGTTATATTGAGAACAAGAAGGAGCATTGGTGTGCTTCACCTATGGTCATATTCAAGGACATAGAAGACTTGAATAAGGTGAGAATGGCGGTCTGGGTTCAGCATAGAATGAACTACCATGATGTAGGTGAAAGGTGGATCCGGAGAGCTGTTTTGGTTGAAGAGATGGTAAAGATTTTCCGAGAGCTCGACCTTCAGTACCGTCTTCTCCCGGTCGATGTTAATGTCCGAACATTACCACCCGGTGCACCCTCTACAGAATCGCTTCCACCTATCAATTGA 2007 42.65 MSPPPEDDRRSGKVNSKKSGQMRSGLLGKPDDDDDDTFFDEDLPDKYKKIKFSALILIEWLSLILIIGALICTLSIPELRTQSQWKLKLWKWEVLILSLICGRLVSGWGTRVIVFFIERNFLLRKRVLYFVYGIRNAVQRCLWLCLVLLTWTLLFDEKVTNSNVLKYVTKILVCLLLGTLVWLLKTLMVKVLASSFHVNTYFDRIQESLFHQYVIETLSGPPLIEIQKIEQEEERLADEIRKLQNAGANIPPDLKADAFGTGSRNSGRVIGSVNGRMKSLGHSGNFPKKGDDQGTITVDHLHRLSHKNVSAWNMKRLINIVRHGSLSTLYEQIQGFGYEDESDTRIKSELEAKAAAKKIFQNVARHGFRYIYMEDLMRFLQEEEASKTMSLFEGASESHRISKSSLKNWVFNAFRERRALALTLNDTKTAVNKLNRIVSAIVAIAILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFESIIFLFVIHPYDVGDRCEIDGAEMVVEEMNILTTIFLRGDNSRILYPNSLLSTKAINNFYRSPDMGDAVEFCVHISTPAEKLATMRHRILSYIENKKEHWCASPMVIFKDIEDLNKVRMAVWVQHRMNYHDVGERWIRRAVLVEEMVKIFRELDLQYRLLPVDVNVRTLPPGAPSTESLPPIN 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9639328 9641710 - Conep12aG0129000.1 Cone12ag1250 450094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1250 668 Pfam Mechanosensitive ion channel, beta-domain 483 544 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag1250 668 MobiDBLite consensus disorder prediction 1 15 - -
Cone12ag1250 668 Coils Coil 226 249 - -
Cone12ag1250 668 MobiDBLite consensus disorder prediction 1 33 - -
Cone12ag1250 668 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 658 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cone12ag1250 668 SUPERFAMILY Sm-like ribonucleoproteins 485 544 IPR010920 -
Cone12ag1250 668 PIRSF Memb_At2g17000 2 666 IPR016688 -
Cone12ag1250 668 Gene3D - 495 544 IPR023408 -
Cone12ag1250 668 FunFam Predicted mechanosensitive ion channel 495 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1250 K22048 - - csv:101210264 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1228 Cone-Chr10:9229824 Cone12ag1250 Cone-Chr12:9639328 9.67e-320 dispersed
Cone12ag1250 Cone-Chr12:9639328 Cone7ag0765 Cone-Chr7:4764957 2.81E-182 dispersed
Cone12ag1250 Cone-Chr12:9639328 Cone8ag1305 Cone-Chr8:10642036 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0438 . 110 535 Mechanosensitive Ion Channel Family AT4G00290 65.5 3.4e-157 552.4
Cone6ag1528 . 10 650 Mechanosensitive Ion Channel Family AT5G10490 63.0 2.3e-220 762.7
Cone9ag1443 . 10 652 Mechanosensitive Ion Channel Family AT5G10490 63.3 1.9e-219 759.6
Cone17ag1179 . 1 530 Mechanosensitive Ion Channel Family AT5G10490 64.1 1.2e-173 607.4
Cone9ag1443 . 6 636 Mechanosensitive Ion Channel Family AT1G58200 52.3 4.4e-179 625.5
Cone6ag1528 . 6 617 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.7e-175 613.6
Cone17ag1179 . 1 514 Mechanosensitive Ion Channel Family AT1G58200 61.1 1.4e-161 567.4
Cone10ag1228 . 54 951 Mechanosensitive Ion Channel Family AT1G53470 55.1 3.6e-258 888.6
Cone8ag1305 . 126 913 Mechanosensitive Ion Channel Family AT1G53470 51.7 1.2e-216 750.7
Cone12ag1250 . 38 666 Mechanosensitive Ion Channel Family AT1G53470 60.1 4.7e-210 728.8
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT1G53470 55.1 8.9e-124 442.2
Cone10ag1228 . 52 949 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.8e-243 839.7
Cone12ag1250 . 15 666 Mechanosensitive Ion Channel Family AT3G14810 55.3 4.3e-200 695.7
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT3G14810 52.6 5.9e-109 392.9
Cone10ag1228 . 54 951 Mechanosensitive Ion Channel Family AT1G78610 58.6 7.2e-280 960.7
Cone8ag1305 . 90 913 Mechanosensitive Ion Channel Family AT1G78610 54.9 8.6e-241 830.9
Cone12ag1250 . 3 666 Mechanosensitive Ion Channel Family AT1G78610 61.3 6.0e-226 781.6
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT1G78610 51.9 9.2e-118 422.2
Cone10ag1228 . 189 951 Mechanosensitive Ion Channel Family AT2G17000 57.0 5.7e-229 791.6
Cone8ag1305 . 198 902 Mechanosensitive Ion Channel Family AT2G17000 57.9 2.7e-215 746.1
Cone12ag1250 . 4 655 Mechanosensitive Ion Channel Family AT2G17000 58.5 2.1e-207 719.9
Cone12ag1250 . 3 410 Mechanosensitive Ion Channel Family AT2G17010 61.3 5.9e-128 455.7
Cone4ag1693 . 63 713 Mechanosensitive Ion Channel Family AT5G19520 52.9 1.1e-183 641.0
Cone18ag0468 . 76 624 Mechanosensitive Ion Channel Family AT5G19520 50.3 9.7e-148 521.5
Cone11ag1110 . 63 586 Mechanosensitive Ion Channel Family AT5G19520 51.4 8.5e-136 481.9
Cone4ag1693 . 63 713 Mechanosensitive Ion Channel Family AT5G12080 55.2 1.0e-194 677.6
Cone4ag0813 . 71 767 Mechanosensitive Ion Channel Family AT5G12080 52.2 1.8e-194 676.8
Cone7ag0765 . 95 795 Mechanosensitive Ion Channel Family AT5G12080 51.1 5.7e-193 671.8
Cone18ag0468 . 53 653 Mechanosensitive Ion Channel Family AT5G12080 52.0 1.5e-161 567.4
Cone11ag1110 . 63 615 Mechanosensitive Ion Channel Family AT5G12080 50.4 1.5e-145 514.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67