Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag1250 | ATGAGCCCGCCGCCTGAAGATGATCGGCGGTCCGGCAAGGTCAATAGTAAGAAATCCGGCCAAATGCGTTCCGGATTGTTGGGCAAGCCGGACGATGACGATGACGACACATTTTTTGACGAGGATCTTCCAGACAAGTACAAGAAGATCAAATTCAGTGCTCTGATTTTGATAGAATGGCTGAGCTTGATTTTAATCATCGGGGCTCTAATTTGCACTCTTTCAATCCCTGAATTGAGAACTCAAAGCCAATGGAAACTTAAACTATGGAAATGGGAAGTTTTAATTTTGTCCTTGATCTGTGGGAGATTAGTTTCAGGCTGGGGAACTAGGGTTATTGTGTTCTTTATAGAGAGAAATTTCCTTCTACGCAAAAGGGTTCTTTATTTCGTATATGGGATCAGAAATGCAGTACAGCGTTGTCTCTGGCTTTGTCTTGTTCTACTGACATGGACACTATTATTTGATGAAAAGGTAACAAACAGCAATGTGCTTAAATATGTGACCAAGATCTTGGTATGTCTGCTACTAGGTACTTTAGTCTGGTTACTGAAAACCCTGATGGTTAAGGTCTTAGCTTCTTCATTCCATGTAAATACTTATTTTGACAGAATCCAAGAATCTCTGTTCCACCAATACGTAATTGAAACTCTTTCGGGCCCACCATTGATCGAGATTCAGAAGATTGAGCAAGAAGAAGAAAGGCTTGCTGATGAGATTAGAAAGTTGCAAAATGCAGGGGCTAATATCCCGCCTGATCTTAAAGCGGACGCCTTTGGTACTGGTTCTAGGAATAGTGGAAGAGTGATTGGAAGTGTTAATGGAAGGATGAAGAGCTTGGGGCATTCCGGGAATTTTCCGAAGAAAGGAGATGATCAAGGGACAATAACAGTCGATCACTTGCATAGGTTGAGTCATAAGAATGTCTCGGCTTGGAACATGAAGAGGTTGATTAATATCGTCCGGCATGGTTCGCTTTCCACGCTTTATGAACAGATTCAAGGTTTTGGTTATGAGGATGAGTCTGATACTCGGATCAAAAGTGAACTCGAGGCTAAAGCTGCTGCAAAGAAAATCTTTCAGAATGTGGCTAGGCATGGTTTTAGGTATATATATATGGAGGATTTGATGCGTTTCTTGCAAGAAGAGGAGGCTTCGAAAACCATGAGCCTTTTCGAAGGAGCGTCCGAGAGTCATAGAATTAGCAAATCATCCTTGAAAAACTGGGTGTTTAATGCGTTTAGAGAGCGGCGAGCATTAGCTTTGACACTGAACGATACGAAAACAGCCGTGAACAAACTGAACCGAATTGTGAGCGCTATTGTTGCCATTGCTATATTAGTCATTTGGCTTCTTATACTCGGAATCGCCACCACCAAATTCCTCCTCTTTGTAAGCTCACAACTTGTCCTCGTCGCTTTTATCTTTGGAAACACCTGCAAGACCATTTTCGAATCCATTATCTTCTTGTTTGTGATCCATCCATATGACGTTGGCGATCGCTGTGAAATCGATGGAGCCGAGATGGTTGTAGAGGAAATGAACATCTTGACCACCATCTTTCTAAGAGGCGATAACTCGAGGATTCTATACCCTAACAGCCTCCTTTCAACCAAGGCTATTAACAACTTCTATCGTAGTCCTGATATGGGGGATGCAGTTGAATTCTGTGTTCATATATCTACTCCTGCAGAAAAGTTAGCCACGATGAGACACAGAATACTAAGTTATATTGAGAACAAGAAGGAGCATTGGTGTGCTTCACCTATGGTCATATTCAAGGACATAGAAGACTTGAATAAGGTGAGAATGGCGGTCTGGGTTCAGCATAGAATGAACTACCATGATGTAGGTGAAAGGTGGATCCGGAGAGCTGTTTTGGTTGAAGAGATGGTAAAGATTTTCCGAGAGCTCGACCTTCAGTACCGTCTTCTCCCGGTCGATGTTAATGTCCGAACATTACCACCCGGTGCACCCTCTACAGAATCGCTTCCACCTATCAATTGA | 2007 | 42.65 | MSPPPEDDRRSGKVNSKKSGQMRSGLLGKPDDDDDDTFFDEDLPDKYKKIKFSALILIEWLSLILIIGALICTLSIPELRTQSQWKLKLWKWEVLILSLICGRLVSGWGTRVIVFFIERNFLLRKRVLYFVYGIRNAVQRCLWLCLVLLTWTLLFDEKVTNSNVLKYVTKILVCLLLGTLVWLLKTLMVKVLASSFHVNTYFDRIQESLFHQYVIETLSGPPLIEIQKIEQEEERLADEIRKLQNAGANIPPDLKADAFGTGSRNSGRVIGSVNGRMKSLGHSGNFPKKGDDQGTITVDHLHRLSHKNVSAWNMKRLINIVRHGSLSTLYEQIQGFGYEDESDTRIKSELEAKAAAKKIFQNVARHGFRYIYMEDLMRFLQEEEASKTMSLFEGASESHRISKSSLKNWVFNAFRERRALALTLNDTKTAVNKLNRIVSAIVAIAILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFESIIFLFVIHPYDVGDRCEIDGAEMVVEEMNILTTIFLRGDNSRILYPNSLLSTKAINNFYRSPDMGDAVEFCVHISTPAEKLATMRHRILSYIENKKEHWCASPMVIFKDIEDLNKVRMAVWVQHRMNYHDVGERWIRRAVLVEEMVKIFRELDLQYRLLPVDVNVRTLPPGAPSTESLPPIN | 668 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9639328 | 9641710 | - | Conep12aG0129000.1 | Cone12ag1250 | 450094 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag1250 | 668 | Pfam | Mechanosensitive ion channel, beta-domain | 483 | 544 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag1250 | 668 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cone12ag1250 | 668 | Coils | Coil | 226 | 249 | - | - | |
| Cone12ag1250 | 668 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cone12ag1250 | 668 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 11 | 658 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER) | |
| Cone12ag1250 | 668 | SUPERFAMILY | Sm-like ribonucleoproteins | 485 | 544 | IPR010920 | - | |
| Cone12ag1250 | 668 | PIRSF | Memb_At2g17000 | 2 | 666 | IPR016688 | - | |
| Cone12ag1250 | 668 | Gene3D | - | 495 | 544 | IPR023408 | - | |
| Cone12ag1250 | 668 | FunFam | Predicted mechanosensitive ion channel | 495 | 544 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag1228 | Cone-Chr10:9229824 | Cone12ag1250 | Cone-Chr12:9639328 | 9.67e-320 | dispersed | |
| Cone12ag1250 | Cone-Chr12:9639328 | Cone7ag0765 | Cone-Chr7:4764957 | 2.81E-182 | dispersed | |
| Cone12ag1250 | Cone-Chr12:9639328 | Cone8ag1305 | Cone-Chr8:10642036 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag1250 | K22048 | - | csv:101210264 | 890.567 |