Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1251 ATGGTGATGGACGATAACGAGAGCTGTGGTAGTAGAGCGCAAGAGACGTCTAATCTGCCTGCTCAGGCGACTCGCCAACAGAGGCAAAAGCTCGAGGTCTACAATGAGGTTCTCCGCCGCCTTAAGGATTCGGGCAATCCTGAGGCCGTTCAGCCTGGTTTCGACGACGAGCTCTGGTCTCACTTCACGCGCCTTCCTACGCGATATGCTCTCGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTATGCACAAAAGATTACTGCATTTGGCTCACAATCCTGCTAGTAGACCTGCAATTGAAGTTCGCCTTGTCCAGGTTCATTCAATATCAGACGGGACTTCAGCCGAGGTTACCACCCCACATCCTGGTAAAGACGCCATCCAAAGTTATCCAAATTTCTCGAACAGACAGAGTTTACATCCACCACCAGCATTTGGGTCATCACCTAATCTAGAAGCTCTTGCACTTGAAGCTAACAAATCTCATGATCATGACGAGGAACAATCTGTTCATGCTACAGAAAAATCATCCCGGCCCATGCATGAAATCACTTTCTCAACAGACGACAAACCCAAACTTCTCAGTCAGTTAACTTCTTTGCTTGCCGATATTGGGTTGAATATCCAAGAAGCACATGCATTTTCCACGGTAGATGGTTACTCCTTGGATGTCTTTGTTGTAGATGGATGGCCATATGAGGAAACAGAGCAATTGATAACTGCATTGGAAAAGGAAGTATTAAAGATTGAGAAGCAGGGCTGGCTCACCAATGCTTCAGTAGCTCCCAAAATCGAGCATGATAGAGTAGCGGTAAAATGTGAACCTGACCATGTGAAAATACCTACTGATGGAACTGATGTATGGGAGATTGATCCTCAACATTTGAAGTTCGGGAGTAAAATTGCATCTGGGACTTATGGCGATCTGTACAAAGGTACATACTGTAGCCAGGAAGTTGCTATTAAAGTCCTTAAACCCGAAACCGTAAGTTCTGATATACAGAGAGAATTTGCCCAGGAGGTCTTCATTATGAGGAAGGTTCGACACAAAAATGTTGTGCAATTCATAGGGGCATGTACCAGGGCACCTACCCTGTATATTGTAACGGAATTTATGTCTGGTGGAAGTGTGTACGACTATTTACATAAGGAAAAAGGCGTATTCAAGCTTCCAACCTTGCTCAAGGTAGCAATTGACATCTCCAAAGGAATGAACTACTTGCACCAAAATAATATTATTCACAGAGATTTGAAGACCGCCAATCTTTTGATGGACGAAAATGACGTTGTTAAGGTCGGTGATTTCGGAGTTGCAAGAGTGAAATCTCAATCAGGAGTCATGACAGCAGAAACTGGGACGTATCGGTGGATGGCCCCTGAGGTTATAGAACACAAGCCCTATGATCACAAAGCGGATGTTTTCAGTTTTGGAATCGTGCTGTGGGAGTTGCTCACTGGGAAGCTTCCCTATGACTACTTAACACCGTTACAAGCCGCGGTTGGTGTGGTTCAAAAGGGTCTAAGGCCTACTATCCCAGCAAATACCCATTCAAAGCTTGTCGAGTTACTGGAGAGATGCTGGGTGAAAGATCCAGCATTGAGACCTGATTTCACTGAAATCATAGAGAACCTGCAGAAAGTTGCCAAAGAGGTCGGAGACGACGGAGGAGATGAACGGCGCAAACACAGATCATCTGGAAGCTTCCTGTCTAACTTCAGACGTCAACACTAA 1734 45.27 MVMDDNESCGSRAQETSNLPAQATRQQRQKLEVYNEVLRRLKDSGNPEAVQPGFDDELWSHFTRLPTRYALDVNVERAEDVLMHKRLLHLAHNPASRPAIEVRLVQVHSISDGTSAEVTTPHPGKDAIQSYPNFSNRQSLHPPPAFGSSPNLEALALEANKSHDHDEEQSVHATEKSSRPMHEITFSTDDKPKLLSQLTSLLADIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETEQLITALEKEVLKIEKQGWLTNASVAPKIEHDRVAVKCEPDHVKIPTDGTDVWEIDPQHLKFGSKIASGTYGDLYKGTYCSQEVAIKVLKPETVSSDIQREFAQEVFIMRKVRHKNVVQFIGACTRAPTLYIVTEFMSGGSVYDYLHKEKGVFKLPTLLKVAIDISKGMNYLHQNNIIHRDLKTANLLMDENDVVKVGDFGVARVKSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYDYLTPLQAAVGVVQKGLRPTIPANTHSKLVELLERCWVKDPALRPDFTEIIENLQKVAKEVGDDGGDERRKHRSSGSFLSNFRRQH 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9642935 9648656 - Conep12aG0129100.1 Cone12ag1251 450095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1251 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 CDD STKc_MAP3K-like 302 545 - -
Cone12ag1251 577 SUPERFAMILY ACT-like 180 246 IPR045865 -
Cone12ag1251 577 SMART serkin_6 296 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 MobiDBLite consensus disorder prediction 129 145 - -
Cone12ag1251 577 Coils Coil 233 253 - -
Cone12ag1251 577 MobiDBLite consensus disorder prediction 9 28 - -
Cone12ag1251 577 Pfam Protein tyrosine and serine/threonine kinase 296 545 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 ProSiteProfiles ACT domain profile. 183 258 IPR002912 -
Cone12ag1251 577 CDD ACT_TyrKc 181 248 - -
Cone12ag1251 577 MobiDBLite consensus disorder prediction 1 28 - -
Cone12ag1251 577 FunFam serine/threonine-protein kinase HT1 375 566 - -
Cone12ag1251 577 Gene3D Phosphorylase Kinase; domain 1 283 374 - -
Cone12ag1251 577 ProSiteProfiles Protein kinase domain profile. 296 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 MobiDBLite consensus disorder prediction 552 566 - -
Cone12ag1251 577 FunFam Serine/threonine-protein kinase isoform 1 286 374 - -
Cone12ag1251 577 Gene3D Transferase(Phosphotransferase) domain 1 375 568 - -
Cone12ag1251 577 MobiDBLite consensus disorder prediction 114 181 - -
Cone12ag1251 577 MobiDBLite consensus disorder prediction 552 577 - -
Cone12ag1251 577 PANTHER SERINE-THREONINE PROTEIN KINASE 84 547 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone12ag1251 577 SUPERFAMILY Protein kinase-like (PK-like) 283 544 IPR011009 -
Cone12ag1251 577 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 PRINTS Tyrosine kinase catalytic domain signature 472 494 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 PRINTS Tyrosine kinase catalytic domain signature 453 463 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 PRINTS Tyrosine kinase catalytic domain signature 407 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 PRINTS Tyrosine kinase catalytic domain signature 516 538 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag1251 577 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1251 Cone-Chr12:9642935 Cone17ag0791 Cone-Chr17:6136205 5.76E-169 dispersed
Cone1ag0742 Cone-Chr1:7069075 Cone12ag1251 Cone-Chr12:9642935 2.80E-44 dispersed
Cone4ag1692 Cone-Chr4:12592297 Cone12ag1251 Cone-Chr12:9642935 6.83E-45 dispersed
Cone12ag0844 Cone-Chr12:7624899 Cone12ag1251 Cone-Chr12:9642935 4.76E-276 wgd
Cone12ag1251 Cone-Chr12:9642935 Cone7ag1915 Cone-Chr7:12257561 8.09E-226 wgd
Cone12ag1251 Cone-Chr12:9642935 Cone8ag1306 Cone-Chr8:10645628 1.40E-154 wgd
Cone12ag1251 Cone-Chr12:9642935 Cone8ag0877 Cone-Chr8:8624044 9.10E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81978 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1251 - - - 0.0