Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1252 ATGGGATTTGTGTTTGCGTTTACAGTTTCGTCCTCTCCAGCTACGATGTACTCTCTCAGGAAACCCCTAAATTCCGTCGTTCCAATTCGCTGTTCTTCACCTGCTTACTCGCCTTCTTCATCATCCGTCCTGAATCGTTCGAGATCCACTCAGTTCGATCTCAAAACGTACTGGACGAAATTGATTCTCGAGATCGATCAGAAGCTCGATGAAGCTATTTCCATTAACTATCCTGAGCAGATCTACGAGGCCATGCGGTACTCCGTCTTAGCCAAAGGAGCCAAGCGAGCACCGCCGGTCATGTGCATAGCGGCTTGTGAGCTCTTCGGCGGCAACCGCCTCGCTGCATTCCCCACAGCATGCGCCCTGGAAATGGTCCATGCTGCTTCACTGATCCACGATGACCTTCCCTCAATGGACGATGACCCTTCTCGCCGAGGCCAGCCCTCAAACCACACAGTTTTTGGCGTCAATATGGCAATCCTAGCTGGGGATGCCCTCTTCCCTCTCGGCTTCCGCCACCTTGTCTCACACACACCTTGTAGCCTTGTACCAGAAACACGTCTTTTACGTGTGATTACCGAGATTGCCCGGGCTGTAGGGTCCACGGGGATGGCAGCCGGGCAGTTCGTTGATCTTGAAGGTGGGCCCAACTCGGTTGAATTCGTGCAGGACAAGAAATTCGGGGAAATGAGCGTGTGCTCTGCTGTGTGTGGAGGGCTTATAGCCGGAGCTGAGGAGGATGAGATACAGAGATTAAGACGGTATGGGAGAGCGGTTGGGGTGTTGAATCAGGTAGTGGATGATATATTGGAAGAGAGGATCAGGCAGAAGAATGTAGATGATGATAATGAGGGGAAGAAGAGGAAGAAGAAGAGTTATGTAGGGTTTTATGGTTTGGAGAAGGCAGTGGAGGTGGCAGAGAAGCTTAGAGCAGATGCTAAGAGGGAGTTGGATGGGTTTGAGAAGTATGGTGATTCAGTGCTTCCTCTTTATAGCTTTGTTGATTATGCTGCTGATAGGGGCTTTACCATTTGA 1038 50.67 MGFVFAFTVSSSPATMYSLRKPLNSVVPIRCSSPAYSPSSSSVLNRSRSTQFDLKTYWTKLILEIDQKLDEAISINYPEQIYEAMRYSVLAKGAKRAPPVMCIAACELFGGNRLAAFPTACALEMVHAASLIHDDLPSMDDDPSRRGQPSNHTVFGVNMAILAGDALFPLGFRHLVSHTPCSLVPETRLLRVITEIARAVGSTGMAAGQFVDLEGGPNSVEFVQDKKFGEMSVCSAVCGGLIAGAEEDEIQRLRRYGRAVGVLNQVVDDILEERIRQKNVDDDNEGKKRKKKSYVGFYGLEKAVEVAEKLRADAKRELDGFEKYGDSVLPLYSFVDYAADRGFTI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9651821 9653604 - Conep12aG0129200.1 Cone12ag1252 450096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1252 345 Gene3D Farnesyl Diphosphate Synthase 51 345 IPR008949 -
Cone12ag1252 345 SFLD Isoprenoid Synthase Type I 82 323 - -
Cone12ag1252 345 CDD Trans_IPPS_HT 78 341 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cone12ag1252 345 FunFam Geranylgeranyl diphosphate synthase 51 343 - -
Cone12ag1252 345 SUPERFAMILY Terpenoid synthases 55 321 IPR008949 -
Cone12ag1252 345 Pfam Polyprenyl synthetase 79 304 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cone12ag1252 345 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 47 341 - GO:0004659(PANTHER)
Cone12ag1252 345 ProSitePatterns Polyprenyl synthases signature 1. 131 147 IPR033749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1252 K13789 - - rcu:8279660 503.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0561 Cone-Chr11:3151945 Cone12ag1252 Cone-Chr12:9651821 7.25E-164 dispersed
Cone12ag1252 Cone-Chr12:9651821 Cone8ag0081 Cone-Chr8:427314 2.20E-70 dispersed
Cone6ag0053 Cone-Chr6:300199 Cone12ag1252 Cone-Chr12:9651821 1.99E-31 transposed
Cone12ag1252 Cone-Chr12:9651821 Cone8ag1307 Cone-Chr8:10648657 4.64E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006949 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 2 1 2 2 1 2 2 3 0 37