Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1254 ATGGCTTCACTTGTGCTCCTGGAGAGCAGCCCTATCATGTTAGGATCATGGCACGGCTTAACCGCTCTTGTTCTTGGTTGTGATGATCATGCGTTCGAGGCAGCTAACGGTGAGGAACTATGGAGATATGCTGCGGCCAATCCGGCTCATAGTCAGCTGATTAATGAAGCCATGGCTTGTGATGCTAGAATGACTATGCTTGTGATACTTAACGATTTTCCTGACTTGTTTGATGGGATTGAGAGTGTGGTTGATGTCGGTGGTGGTAATGGTACTAGCTTGCATGTATTAGTCAAGTCTTGTCCTTGGATTCGAGGAATCAACTTCGACCTTCCTCATGTTGTTTCGGCTTTGCCCGAATTGACCAGAGTAGAACAAGTTGGTGGGGACATGTTCGTTAATATTCCAAACGCCGATGCTGTTTTTATCAAGTGGGTTCTTCATGATTGGGGAGATGAAGAGTGCATCAAAATATTGAAAAACTGCGGGGAAACAGTTCCAAAGGACAAAGGGAAAGTGATACCGGTCGAGGCCCGTGATCGAGGAAGGAGACGAAAGCAAGCTAACGGATGTGAGATTGTTGCTTGA 588 46.26 MASLVLLESSPIMLGSWHGLTALVLGCDDHAFEAANGEELWRYAAANPAHSQLINEAMACDARMTMLVILNDFPDLFDGIESVVDVGGGNGTSLHVLVKSCPWIRGINFDLPHVVSALPELTRVEQVGGDMFVNIPNADAVFIKWVLHDWGDEECIKILKNCGETVPKDKGKVIPVEARDRGRRRKQANGCEIVA 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9658169 9658889 - Conep12aG0129500.1 Cone12ag1254 450098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1254 195 Pfam O-methyltransferase domain 17 179 IPR001077 GO:0008171(InterPro)
Cone12ag1254 195 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 195 IPR016461 GO:0008168(InterPro)
Cone12ag1254 195 Gene3D Vaccinia Virus protein VP39 1 188 IPR029063 -
Cone12ag1254 195 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 177 IPR029063 -
Cone12ag1254 195 PANTHER O-METHYLTRANSFERASE 1 180 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1254 K22588 - - vvi:100264018 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1254 Cone-Chr12:9658169 Cone8ag1495 Cone-Chr8:11359495 5.44E-57 dispersed
Cone12ag1254 Cone-Chr12:9658169 Cone8ag1309 Cone-Chr8:10655434 4.76E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140