Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1261 ATGGTGCCTCTGTTTCTTTGCTTCCTTCTCTTCTTCTTCTTCTCCTCCTCCATATCTGCTTGTGATCGATGCGTTCACCAATCCAAGTCTGCCTTTTTCTCCTCAGATTCTAGACTTTCATATGGAGCATGTGGGTATGGCTCCTTAGCATCTGGCCTTAACAATGGAAACACTGCTGGTGCCGTGTCTTTCCTTTTCAAAGATGGAGCGGGTTGTGGCGCTTGCTTTCAGATAAGATGCAAGGATGCATCTGCATGCAGAAGAGCAGGGACTAAAGTGATAGTGACGGATTTAAATACCGATGACCGATATCATTTTGTTCTCAGCAGAAAAGCTTTCAATGAAATGGCTCTACCGGAACAGGACATTTCCAATCTCGGAATTGTCGACGTGGAATACAAGAGGGTGCCTTGTGAGTACGAGAACAAAAATTTGGCGGCGCGTGTGGAAGAACCGAGCCGCAAAGATTTTCTGTTAATCAAATTCCTATATGAAGGTGGTCAAACTGAAATAGCCAACGTTGACGTCGCTCAGGTGGGTACTTCCGATTGGATACCCATGAAGAGGAACTATGGGGCAGTGTGGGACACGAGCAGAGTGCCCGATGGGGCCTTGCAGTTCCGGTTTGTGGTGACTTCAGGGTTCGACAGGAAGGGGATTTGGGCAAAGAATGTTCTTCCGGCTGGCTGGCAACCTGGAGTTATATATGACACTGGCGTTCAAATCACTGAGATTGCTCAAGAGCCGTGTTCTCCCTGTGATGGAGGCAATTGGTAA 777 47.62 MVPLFLCFLLFFFFSSSISACDRCVHQSKSAFFSSDSRLSYGACGYGSLASGLNNGNTAGAVSFLFKDGAGCGACFQIRCKDASACRRAGTKVIVTDLNTDDRYHFVLSRKAFNEMALPEQDISNLGIVDVEYKRVPCEYENKNLAARVEEPSRKDFLLIKFLYEGGQTEIANVDVAQVGTSDWIPMKRNYGAVWDTSRVPDGALQFRFVVTSGFDRKGIWAKNVLPAGWQPGVIYDTGVQITEIAQEPCSPCDGGNW 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9682967 9684259 + Conep12aG0130200.1 Cone12ag1261 450105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1261 258 SUPERFAMILY PHL pollen allergen 143 237 IPR036749 -
Cone12ag1261 258 Pfam Expansin C-terminal domain 148 227 IPR007117 -
Cone12ag1261 258 SMART dpbb_1 58 133 IPR007112 -
Cone12ag1261 258 PANTHER EXPANSIN-B3 6 244 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cone12ag1261 258 Gene3D - 140 243 IPR036749 -
Cone12ag1261 258 Gene3D - 15 139 IPR036908 -
Cone12ag1261 258 Pfam Lytic transglycolase 64 133 IPR009009 -
Cone12ag1261 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Cone12ag1261 258 SUPERFAMILY Barwin-like endoglucanases 10 141 IPR036908 -
Cone12ag1261 258 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576(InterPro)
Cone12ag1261 258 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576(InterPro)
Cone12ag1261 258 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Cone12ag1261 258 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cone12ag1261 258 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Cone12ag1261 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 143 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1261 Cone-Chr12:9682967 Cone3ag1230 Cone-Chr3:31083531 2.79E-99 dispersed
Cone12ag1261 Cone-Chr12:9682967 Cone8ag1316 Cone-Chr8:10674331 4.55E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1261 - - - 0.0