Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1269 ATGGAGAGTGGGGAAAAGGGTGTTGATTTCTCAAGCACGCCGTTCGATGAGGTGAAGAAATTGATGGAGGTGATTGAGAAAGTGGGGAGATTTTCTGGGTTTCGAAAAACGCAGAGGAAGGAGTGCTTGAATTTAGTGAGAAGGTTGAAGCTATTGGTCCCGCTCTTAGAGGAGATAAGTGAGCTTGAAGGTTTTTCAATTGACTCTGGGTCTTTTTCGAACTGGTTAAGTAATTTGAGAAACGCCATTCTTTCGGCCAAGCAATTGTTAAAGCATTGCAACTTCGGAAGCAAGATTTACTTGGCACTTGAAAGTGAGGCTGTGATGGGAAGATTTCATGCTGTTTACGACAAATTAAATGAAGTCCTTGATGATTTGCCTTATGATGAACTTGCTATCTCATTTGAAGTGAAAGAGCAGGTTGAGTTAATGTGTAAGCAACTGAATAGGGCGAAAAGAAGAACCGATACACAAGACATAGAGTTAGCAATGGACATGATGGTTGTGTTCTCGAAAAAGGATGAGAGAAATACAGATAATGTGATCCTAGAAAGGCTAGCCAACAAGCTGGGATTACACACAATTGCAGACCTAAAAGAAGAAACGGAAGCCGTTAAGAAGCTAGCTAAACAGAGAATCGGACAGAATTCTGAAACCATCGAGAACATTCTGGACCTCTTAAGCAAATTCAAACAGATATTAGGTCTTGACAAAGCTACTTCGCTTGATGGGCCCGTTTCTGTAAAGTGTTTGCAACGATGTCAGTCTTCATTAATCCCTAATGAATTCCTCTGCCCTATTAAGCTTGAGATTATGACGGACCCTGTTATTGTAGCGACCGGGCAGACTTATGAAAGGGAAAGCATTCAAAAGTGGCTAGGTTCGAACCATAGAACATGTCCAAAAACCGGACAGACATTGGATCATTTTTCCATAGCACCAAATTATGCTCTCAAGAATTTAATTCAGCAATGGTGTGAGAAGAACAATGTAGAACTGCCTAAGAAGGAACCCTATGCTGGCTCAGACACCTCCTTTGCTGCACTCATTGAAGAAATCTCCACCTTAACAAAAAACCTATCATCTTCTAACATGGATGTTCAAAGAGAAGCAATAATGAAGATCAGAATCCTCGCCAAGGAGAATCCCGAAAACAGAATCTTAATCGCTAGTAATGGAGGAATCCCTCCTTTAGTCCATCTCCTATCCAATCCAGAACCCAAGTTTCAAGAACATACCGTAACGGCTTTATTAAACTTGTCGATTGATGAAGCGAATAAAAGACTCATAGCAAGAGAAGGAGCTATCCCTCACATTATCGAAATATTACAAAACGGAACAGATGAAGCTAGAGAGAACTCGGCTGCTGCTGTTTGTAGCTTATCAATGCTCGACGAAAATAAAGTACTTGTTGGGAATTTGGACGGGGTCCCACCTTTGGTAAATCTGTTACAGAACGGAACAACCCGAGGTAAAAAAGATGCAGCCACCGCATTATTTAACCTGTCATTAAACCAGGCTAATAAATCCAGAGCAATTGAGGCGGGGATTATTCCCCCTTTACTTCATTTGCTTGAAAATAAGAACTTGGGAATGGTAGACGAGGCTTTGTCGATACTGTTGCTTGTTGTGTCGCATCCATTGGGGAGAAGTGAGATTGGAAGTATATCTTTTATCGAAACTTTGGTCGATATTATTAAAGACGGGTCGCCTAAGAGTAAGGAATGTGCTGTTTCACTTCTGTTAGAGCTCGGATTGAATAATTCGTCTTGTGTTTTGGCTGCGCTTCAGTTTGGTGTGTATGAAGATTTAGTAGAGGTTTCTAGGTCGGGGACGAATCGAGCTCAAAGGAAGGCGAATTCGCTTTTGCAGTATATGAGCAAGTGTGAGCACATACCTTGA 1902 41.48 MESGEKGVDFSSTPFDEVKKLMEVIEKVGRFSGFRKTQRKECLNLVRRLKLLVPLLEEISELEGFSIDSGSFSNWLSNLRNAILSAKQLLKHCNFGSKIYLALESEAVMGRFHAVYDKLNEVLDDLPYDELAISFEVKEQVELMCKQLNRAKRRTDTQDIELAMDMMVVFSKKDERNTDNVILERLANKLGLHTIADLKEETEAVKKLAKQRIGQNSETIENILDLLSKFKQILGLDKATSLDGPVSVKCLQRCQSSLIPNEFLCPIKLEIMTDPVIVATGQTYERESIQKWLGSNHRTCPKTGQTLDHFSIAPNYALKNLIQQWCEKNNVELPKKEPYAGSDTSFAALIEEISTLTKNLSSSNMDVQREAIMKIRILAKENPENRILIASNGGIPPLVHLLSNPEPKFQEHTVTALLNLSIDEANKRLIAREGAIPHIIEILQNGTDEARENSAAAVCSLSMLDENKVLVGNLDGVPPLVNLLQNGTTRGKKDAATALFNLSLNQANKSRAIEAGIIPPLLHLLENKNLGMVDEALSILLLVVSHPLGRSEIGSISFIETLVDIIKDGSPKSKECAVSLLLELGLNNSSCVLAALQFGVYEDLVEVSRSGTNRAQRKANSLLQYMSKCEHIP 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9729543 9732173 + Conep12aG0131000.1 Cone12ag1269 450113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1269 633 PANTHER U BOX DOMAIN-CONTAINING 36 628 - -
Cone12ag1269 633 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 Gene3D - 491 631 IPR011989 -
Cone12ag1269 633 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag1269 633 FunFam RING-type E3 ubiquitin transferase 15 129 - -
Cone12ag1269 633 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 Pfam Armadillo/beta-catenin-like repeat 505 538 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag1269 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 517 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515(InterPro)
Cone12ag1269 633 FunFam RING-type E3 ubiquitin transferase 338 632 - -
Cone12ag1269 633 Gene3D - 342 490 IPR011989 -
Cone12ag1269 633 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag1269 633 CDD RING-Ubox_PUB 260 310 IPR045210 -
Cone12ag1269 633 SUPERFAMILY ARM repeat 353 627 IPR016024 -
Cone12ag1269 633 SUPERFAMILY RING/U-box 259 334 - -
Cone12ag1269 633 FunFam RING-type E3 ubiquitin transferase 255 332 - -
Cone12ag1269 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 333 IPR013083 -
Cone12ag1269 633 CDD MLKL_NTD 18 149 - -
Cone12ag1269 633 Gene3D - 12 129 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1269 Cone-Chr12:9729543 Cone17ag1452 Cone-Chr17:9852855 2.32E-201 dispersed
Cone8ag1323 Cone-Chr8:10724588 Cone12ag1269 Cone-Chr12:9729543 5.46E-147 transposed
Cone12ag1269 Cone-Chr12:9729543 Cone8ag1322 Cone-Chr8:10723664 2.41E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1269 - - - 0.0