Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1271 ATGGGTGGAGATGGCGATTCTTCCGAGCCCAAAGTTGGTAGTGGTGGTGAGGAAGGGATAGTGATTAACATCCGGTGCTCGAACAGCTCGAAATTTACGGTGAGGACGACGCTTGATTCAAAGGTTGGGGCGTTCAAAGCAATTCTGGCTCAGAATTGTGATGTTCCAGCTGAGCAGCAGCGCTTGATCTATAAAGGTCGCATATTGAAGGACGACCAGACTCTTGAAACTTATGGTTTGATGGCAGATCACACTATTCACATGGTCCGTGGCTCTGCTCCACCTGCATCAGCACTAGCACCGGCACCGACACCGACTCCGACTCCTACTACTACTACTGCCACTGCAAATAGTGGTAATCCTAACATCACCCCAGGTGTCACAAGGGGTGTTGGTACTACCAATGAAGGAGGAAGTTTTGGAAATGCTGGTCTTGGTGCCTCTTTATTTCCAGGACTGGGTTTCAATCAACTAGGTGGAGATGGTGGAGCATCTGGTTTATTCGGAGCTGGACTACCAGAATTGGAACAAATGCAGCAGCAAATGACTCAAAACCCAAACATGATGAGGGATATAATGAACATGCCCGCTTTTCAGAACTTGATGAACAACCCTGAATTGATGCGAACTTTGATTACGAGCAATCCTCAAATGCAAGAGATCATGGATAGGAACCCTGAGCTGTCTCATATACTTAATGATCCTCGAATTTTGCGACAGACGTTCGAAGCTGCCAGGAACCCTGAGCTTATGCGTGAGATGATGAGGAATACTGATAGGGCGATGAGTAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTGAGACGTATGTATGAAAATGTTCAGGAGCCATTTTTGAATGCGACCACTATGCGTGGAAATGCTGGAAATGACTTGAACACGAACCCATTTGCTACTTTGTTGGGAAATCAAGGTGCAACTCAGGCCAGGACTGGTGCCAACAACCCTTCAACCACTGGTTCTGACACAACTACAGGGCCTACTGTTCCAAATGCAAACCCACTTCCCAACCCTTGGGGCAACCTTAGTGGGGGAACACAGAACAACACAGCAAATGCCGGAGGAGATGCAAGGGCAGCTGGTATTGGTGGTCTAGGAGGGACTGGACTCTTTGATATGGGAAACATGCGTGGTGGTGTGCCTGATACTGCTTCATTCAATCAGGTTCTCCAAAATCCAGCTATATCACAGATGATGCAGAGTCTTCTCTCTAATCCCCAATATATGAATCAGATTCTTAGTCTCAATCCACAACTACATGGCATGGTTGATACGAATCCTCGATTAAGAGAAATGATGCAAAATCCGGAACTTCTTCGCCAGTTAGCTAATCCTGAGACAATGCAGCAAATGCTAACGTTGCAACAGTCACTTATGTCTCAGCTCAATCAGCGTCAATCAACCCAAGAACCAAGTCAGACAGGTCTGCCTACAGGAACTCCCAATAATGCCGGGTTGGACTTATTGATGAACATGTTCAGTGGTCTCGGAGCTGGCAGACTTTCTGACAATTCCAATGTTCCCCCAGAAGAACTATATGCCGCCCAACTTTCTCAGCTTCAAGAAATGGGTTTCTTTGACACCCAAGAAAACATCAGAGCCCTTCGAGCTACTTCCGGAAACGTTCATGCTGCTGTAGAGCGACTCCTGGGAAGTCTTGGGCAGTAA 1692 46.87 MGGDGDSSEPKVGSGGEEGIVINIRCSNSSKFTVRTTLDSKVGAFKAILAQNCDVPAEQQRLIYKGRILKDDQTLETYGLMADHTIHMVRGSAPPASALAPAPTPTPTPTTTTATANSGNPNITPGVTRGVGTTNEGGSFGNAGLGASLFPGLGFNQLGGDGGASGLFGAGLPELEQMQQQMTQNPNMMRDIMNMPAFQNLMNNPELMRTLITSNPQMQEIMDRNPELSHILNDPRILRQTFEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMRGNAGNDLNTNPFATLLGNQGATQARTGANNPSTTGSDTTTGPTVPNANPLPNPWGNLSGGTQNNTANAGGDARAAGIGGLGGTGLFDMGNMRGGVPDTASFNQVLQNPAISQMMQSLLSNPQYMNQILSLNPQLHGMVDTNPRLREMMQNPELLRQLANPETMQQMLTLQQSLMSQLNQRQSTQEPSQTGLPTGTPNNAGLDLLMNMFSGLGAGRLSDNSNVPPEELYAAQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGSLGQ 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9734072 9737513 + Conep12aG0131200.1 Cone12ag1271 450115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1271 563 CDD UBA_PLICs 521 559 - -
Cone12ag1271 563 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Cone12ag1271 563 Pfam Ubiquitin family 22 90 IPR000626 GO:0005515(InterPro)
Cone12ag1271 563 SMART CBM 381 420 IPR006636 -
Cone12ag1271 563 SMART CBM 215 254 IPR006636 -
Cone12ag1271 563 SMART CBM 161 211 IPR006636 -
Cone12ag1271 563 SMART CBM 424 459 IPR006636 -
Cone12ag1271 563 MobiDBLite consensus disorder prediction 315 362 - -
Cone12ag1271 563 Gene3D - 11 100 - -
Cone12ag1271 563 SMART uba_6 521 559 IPR015940 -
Cone12ag1271 563 SMART ubq_7 20 91 IPR000626 GO:0005515(InterPro)
Cone12ag1271 563 PANTHER UBIQUILIN 17 559 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cone12ag1271 563 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 516 560 IPR015940 -
Cone12ag1271 563 SUPERFAMILY Ubiquitin-like 14 103 IPR029071 -
Cone12ag1271 563 CDD Ubl_Dsk2p_like 20 92 - -
Cone12ag1271 563 SUPERFAMILY UBA-like 517 559 IPR009060 GO:0005515(InterPro)
Cone12ag1271 563 Gene3D - 508 562 - -
Cone12ag1271 563 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515(InterPro)
Cone12ag1271 563 FunFam Ubiquilin 1 212 270 - -
Cone12ag1271 563 MobiDBLite consensus disorder prediction 315 363 - -
Cone12ag1271 563 Pfam UBA/TS-N domain 521 557 IPR015940 -
Cone12ag1271 563 MobiDBLite consensus disorder prediction 467 491 - -
Cone12ag1271 563 FunFam Ubiquitin family protein 504 562 - -
Cone12ag1271 563 MobiDBLite consensus disorder prediction 109 124 - -
Cone12ag1271 563 Gene3D - 210 268 - -
Cone12ag1271 563 MobiDBLite consensus disorder prediction 94 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1271 K04523 - - vvi:100267604 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1271 Cone-Chr12:9734072 Cone7ag0594 Cone-Chr7:2849821 9.84E-10 dispersed
Cone12ag0861 Cone-Chr12:7716464 Cone12ag1271 Cone-Chr12:9734072 5.01E-123 wgd
Cone12ag1271 Cone-Chr12:9734072 Cone8ag1325 Cone-Chr8:10728073 2.96E-240 wgd
Cone12ag1271 Cone-Chr12:9734072 Cone8ag0890 Cone-Chr8:8693574 2.06E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39