Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1272 ATGGAAACCAACTTCAACACCATTACAACCAGCACAAGTTCCGATCGGGGTTGCTCACTGGATTTCAACATTTCCACCACAACTTACACCTATTCTTCACCTTCTTCAGGCACAACTGCTCCGAAACACCCACAAGCCTCCCATAGAAAGCGCTCCAAACTCCTTGGAATCAACAAGAACGCATCAACGAATTCCAGCATCATTTCCAAGTCCAAGTACTACAGCAAGAAATCGGACCCCACTACACCGAAAATCACCGAGCCGTGCAGTGAATGTGGTAAGAAGTTCTGGTCGTGGAAGGCTCTTTTTGGGCATATGAGATGTCACCCAGAACGGCAATGGCGTGGGATCAACCCCCCTCCGAACTTCCAACGGCCCATTAGTCCCCCGGCCAGACCCTTAAATAGTAATCCGTTCCAAGTATCAATGACACAAGATGACCATGAAGTTGCAACTTGGTTGATAATGCTGGCCAATGGGCCTAGAGAGGGCGAAAGGATGTCTGAGGACTTAAAAGGTGGTGCAGACCTGTCATGTCGGTTCGAGTGCTTGAGTTGCAAGAAGGTGTTTGGATCCCACCAGGCATTCGGAGGACATAGGGCTAGTCACGAGAATGCGAAGGGTTGTTTTTCCATGATGAGGAGTGATGATCTTGATCATGATCATCAAAATGCTGATCAAAATGATCAGAGGGATGACAGTAACAACAGCAGAGCGGAGGAGAAGATGGTGAATATGGGGTTAGGATTTGGGCACAAGTGTAACGTCTGTATGAGGGTTTTTTCAAGTGGTCAAGCTTTGGGCGGGCATATGAGGTGCCACTGGGAAAAAGTAGAGGATCCAGTTGGTATTGGAGGAAGGAAGGAGGAGGTATACGGTGGCGTTTTTTTGGACTTGAATTTGCCTGCACCTGTTGAAGATGAGTCTAAGTCTTCTTACTCTTCTGGGCTTACTTTGGATCTTAGATTGGGTCTTTGA 978 47.55 METNFNTITTSTSSDRGCSLDFNISTTTYTYSSPSSGTTAPKHPQASHRKRSKLLGINKNASTNSSIISKSKYYSKKSDPTTPKITEPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFQRPISPPARPLNSNPFQVSMTQDDHEVATWLIMLANGPREGERMSEDLKGGADLSCRFECLSCKKVFGSHQAFGGHRASHENAKGCFSMMRSDDLDHDHQNADQNDQRDDSNNSRAEEKMVNMGLGFGHKCNVCMRVFSSGQALGGHMRCHWEKVEDPVGIGGRKEEVYGGVFLDLNLPAPVEDESKSSYSSGLTLDLRLGL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9737824 9738801 + Conep12aG0131300.1 Cone12ag1272 450116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1272 325 MobiDBLite consensus disorder prediction 30 61 - -
Cone12ag1272 325 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Cone12ag1272 325 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 323 - -
Cone12ag1272 325 Pfam C2H2-type zinc finger 180 204 IPR013087 -
Cone12ag1272 325 Pfam C2H2-type zinc finger 252 276 IPR013087 -
Cone12ag1272 325 Pfam C2H2-type zinc finger 89 111 IPR013087 -
Cone12ag1272 325 Gene3D Classic Zinc Finger 178 274 - -
Cone12ag1272 325 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Cone12ag1272 325 MobiDBLite consensus disorder prediction 214 237 - -
Cone12ag1272 325 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Cone12ag1272 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Cone12ag1272 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 274 IPR013087 -
Cone12ag1272 325 SUPERFAMILY beta-beta-alpha zinc fingers 88 112 IPR036236 -
Cone12ag1272 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Cone12ag1272 325 SUPERFAMILY beta-beta-alpha zinc fingers 252 277 IPR036236 -
Cone12ag1272 325 SMART c2h2final6 252 274 IPR013087 -
Cone12ag1272 325 SMART c2h2final6 181 203 IPR013087 -
Cone12ag1272 325 SMART c2h2final6 87 109 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1272 Cone-Chr12:9737824 Cone15ag0546 Cone-Chr15:2715548 2.15E-25 dispersed
Cone6ag1699 Cone-Chr6:12834417 Cone12ag1272 Cone-Chr12:9737824 1.08E-08 transposed
Cone12ag1272 Cone-Chr12:9737824 Cone3ag1243 Cone-Chr3:31221835 1.64E-54 wgd
Cone12ag1272 Cone-Chr12:9737824 Cone8ag1326 Cone-Chr8:10731700 1.53E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44524 PF03168 LEA_2 5.80E-13 CL0159 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1272 - - - 0.0