Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1273 ATGGAATACGGCGGCGTGTTTACGACAGCATCAACTACTCCGGCATTCGACAGCATACCGTCGGCGGCGGATCATATCCACACGGCGGAAATGATGGTTCATCCTCAGCCGACGTTGGATTTCTTGGAAGAACTACTGTCAGAAGGGTGCTGGTTGGAAGCAACGGGTGGGATGATCAACTCGCAGAATAATAACGTCCATAGTTTGCTTTCTTCTGATCATTACCCTAATTACACTGCCCACCATCTCACTTACATGCTAAACCCACATCACCAAATCTACCAAGAAGATCATCATCATAATCAGGGATTGATTTTCCAGGAAATCCGGTCATCGGATCAGAATTTTCTCGCGGAACAAACAGGAGTGTGTAGAAGATGGTGGATATCACCTAGAGCATATCCAACCCCTTGTTCGTCGGTGAAAGAGAGATTAATCCTCGCAATTGGCTGCTTAAAAGAGTGTACTACAGATATTCACGATGATCATGTAAGAGACCTTCACATTCAAATCTGCGTTCCTGTTAAATCGAAAGCTGGGGCTGGATCAGGATCAAGAAGGGCGATGATCAATAGTAATTCTTCTAATAATAGCAGTAGTAGTAGTGATTATCAGTTTGGAGCGCAGGATTGGCAAGACTACTTTCTGGGTTTGCATGGAAGGGCAGGCCATGTCTTAATGAAGCTGCGTGATTGGACAGTTGCCGAGGTTCGGTTCTGGAGAAGAGATGAGTATTACAACAGCAGTACACGTCATCATCATGTACGAGGTGGTAGCCCCTCATGTCTTGCTGTTCCTGTTTTTGAACGAGGTAGTGGGATTTGTTTGGGTGTTGTCGAGATTTTCATGGCTGCTACAACTACTACTGCGAGAACAAGCATTAACTATCGGCCTGATCTTGAATACATGAGCGAAGCTCTTGAGTCTGTAGATCTCGGGAGCTTTCAGAACTATAGTCCTCCCGGTGTGAAGCCTTGCACCACCGATGAGCTCTACCAAGCTGCATTATCCGAAATAATCGAGGTCCTTACATCTGTCTGCAAAGCACATCTACTCCCTCTTGCCGTAACGTGGGCCCCATGTGCCCAACAAGGAAAAACCATCTGCCGGAGTTCTGATGATAACCAAAACTATCTCCTCTGCATCTCCACCATTGAGTCCGCTTACTACGTCGCAGATCTCGAGACACTCAGTTTCCTGGAGGCCTGCAACGAGCACCACTTGCTTCCGGGCCAAGGAATTGTCGGAACAGCTTTTAGTACCAATAAACCGTGTTTTGCCGTAGATATTACGGCCTTCAGCAAAACCGAGTACCCTCTTTCTCACCATGCTCGGGTTTTCGGTTTACGAGCAGCTGTAGCAATTCCTCTCCGTAGCGTCTACACAGGATCAGCCGATTTCGTGCTGGAGTTTTTCTTACCAAAAGATTGCCTTGAAAACGAGGAACAAAAGAGGATGTTGAATTCACTGTCAATAGCTATACAACAGAGTTGTAGAAGCTTGCATTTTGTAATGGAGAAAGACCAATTAGAGGAAGAAGCATTGATGCCACCAAATGGACAACCCAGTAAAGAAGAAACTCAAAAACTTATAAGTACTAATCCTCTATATGAGTCGGGTTTGAAGGAGTCTTCTTGGATTGCTCACATGATGGAAGCACAGCAGAAAGGGAAAGGGATTTCTGTGTCGTTGGAATATCAGAGAGAACCAAGGGAAGAGTTTAAGGTGACAACTCATTGGGATAACATTCAAGGAGGATCATTATTTCCACCAAATGGGCAGGATTTTTCGGCCTTCACTGGACAGCTTCAACAAAGCTCAGGGCCTAAAGTTAGTGTTGAAGGTGGTGGAGAATCTGATTCTTTTGCCAGGCGCCGCCCATCTGGTGGCAGAAAACCAGGTGAGAAGAGGCGGACAAAGGCGGAGAAGACCATAAGCTTGCCAGTTCTTAGACAATACTTTGCCGGAAGTCTGAAAGATGCTGCTAAGAGTATTGGTGTTTGCCCAACCACTCTAAAGAGAATATGCAGGCAACATGGTATAAACCGGTGGCCTTCTAGAAAGATCAAGAAAGTAGGCCACTCTTTAAGGAAACTCCAACTCGTGATCGACTCAGTACATGGTACAGAGGGAGCTATTCAAATCGGGTCGTTTTACAAAAGCTTCCCAGAATTGAGCTCCCCTAATTTCGGTGGGACTGAGGGATTTTCATCACTGACCATGAGTGATCATCATCAGAGACAGCAGTTACACCATCAAGCTGAAAGCGGCTTATTTAGCCATGGGGCCCCTTCAAAGTCCCCCACTTCTTCTTGCAGTCAAACTTCCGGTCCAGCTGGTGCAAAGCAACATACAACAACAACAACCCCTATAACTGTCTTGGGCCGAGGGGACCTTCTAATGGCAGAAGACCCAATTGGAGTTTTGCATAGAGTTTGCAGTGAAGCAGAGTTTCATGCATTGAATCAAGATGGCCCAAACAATCAGAGATCACAAAGCCCACCATTTGGACCAGGAAGAGCAGATGCTTCAAGAGTTAAAGTAACACTTGGCGAAGAAAAGATCCGGTTCAGCTTGCAACCAAATTGGCATTTTAGAGATCTGCAACTTGAAATTGCCAGAAGGTTCAATTTAGATGACATTAGTAGAATCCTTGTGAGGTATGTGGACGGTGATGGTGAATTGGTTCTTCTAACATGTGATACGGATCTCGAGAAGTGTAAGCAGATATACCTATCATCATCTCAGAGCCACACGATTAGACTTTCTCTTCAGTGGGCCAGTCATCAGAATCTGGGAAGTTCGTTTGGAAGTAGTAGGCCCTCCTAA 2829 45.67 MEYGGVFTTASTTPAFDSIPSAADHIHTAEMMVHPQPTLDFLEELLSEGCWLEATGGMINSQNNNVHSLLSSDHYPNYTAHHLTYMLNPHHQIYQEDHHHNQGLIFQEIRSSDQNFLAEQTGVCRRWWISPRAYPTPCSSVKERLILAIGCLKECTTDIHDDHVRDLHIQICVPVKSKAGAGSGSRRAMINSNSSNNSSSSSDYQFGAQDWQDYFLGLHGRAGHVLMKLRDWTVAEVRFWRRDEYYNSSTRHHHVRGGSPSCLAVPVFERGSGICLGVVEIFMAATTTTARTSINYRPDLEYMSEALESVDLGSFQNYSPPGVKPCTTDELYQAALSEIIEVLTSVCKAHLLPLAVTWAPCAQQGKTICRSSDDNQNYLLCISTIESAYYVADLETLSFLEACNEHHLLPGQGIVGTAFSTNKPCFAVDITAFSKTEYPLSHHARVFGLRAAVAIPLRSVYTGSADFVLEFFLPKDCLENEEQKRMLNSLSIAIQQSCRSLHFVMEKDQLEEEALMPPNGQPSKEETQKLISTNPLYESGLKESSWIAHMMEAQQKGKGISVSLEYQREPREEFKVTTHWDNIQGGSLFPPNGQDFSAFTGQLQQSSGPKVSVEGGGESDSFARRRPSGGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKVGHSLRKLQLVIDSVHGTEGAIQIGSFYKSFPELSSPNFGGTEGFSSLTMSDHHQRQQLHHQAESGLFSHGAPSKSPTSSCSQTSGPAGAKQHTTTTTPITVLGRGDLLMAEDPIGVLHRVCSEAEFHALNQDGPNNQRSQSPPFGPGRADASRVKVTLGEEKIRFSLQPNWHFRDLQLEIARRFNLDDISRILVRYVDGDGELVLLTCDTDLEKCKQIYLSSSQSHTIRLSLQWASHQNLGSSFGSSRPS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9744882 9748458 + Conep12aG0131400.1 Cone12ag1273 450117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1273 942 Pfam NLP protein GAF domain 328 502 IPR055081 -
Cone12ag1273 942 SUPERFAMILY CAD & PB1 domains 840 929 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 619 641 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 186 201 - -
Cone12ag1273 942 Gene3D - 844 926 - -
Cone12ag1273 942 SMART PB1_new 843 927 IPR000270 GO:0005515(InterPro)
Cone12ag1273 942 Pfam RWP-RK domain 645 692 IPR003035 -
Cone12ag1273 942 PANTHER PROTEIN NLP8 115 939 IPR045012 GO:0003700(InterPro)
Cone12ag1273 942 ProSiteProfiles PB1 domain profile. 843 927 IPR053793 -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 752 790 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 737 790 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 821 835 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 600 641 - -
Cone12ag1273 942 Pfam PB1 domain 845 925 IPR000270 GO:0005515(InterPro)
Cone12ag1273 942 CDD PB1_NLP 845 925 IPR034891 -
Cone12ag1273 942 ProSiteProfiles RWP-RK domain profile. 631 712 IPR003035 -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 821 843 - -
Cone12ag1273 942 MobiDBLite consensus disorder prediction 178 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1273 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1273 Cone-Chr12:9744882 Cone20ag0023 Cone-Chr20:143717 1.34E-95 dispersed
Cone12ag1273 Cone-Chr12:9744882 Cone3ag1247 Cone-Chr3:31282019 2.08E-243 wgd
Cone12ag1273 Cone-Chr12:9744882 Cone4ag2020 Cone-Chr4:14057012 1.32E-156 wgd
Cone12ag1273 Cone-Chr12:9744882 Cone7ag1936 Cone-Chr7:12353709 3.42E-160 wgd
Cone12ag1273 Cone-Chr12:9744882 Cone8ag1327 Cone-Chr8:10741156 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1273 Cone8ag1327 Cone3ag1247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44525 PF08373 RAP 3.40E-13 CL0236 Cone TF