Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1274 ATGGAAGTGACGACGAAGCTCACCATTAAAGCTCTGTACAAGAACATCAACAACCCAAAACTAGCATGGCACCTCTTCAAGCACATATTTTGCGATACGAATCTTCAATGCGTACCCGTCATTGCTCGGATACTTGCCGGAGCGAAAATGGATAGGGAAATCGACGAGCTTTACGAACTCCTCCTCGTCTCTCAGAATGGTGAAGCTTCTCATTCCTCTCTTCTTTTCCTTGTGCGAATTTTGGCCAGATCGGGTCTCTCTGAGAAAGCGGTTTCTCAGTTTAGATCTATCCGAATCCGGTTTCCAGAAAACACTCCTTCTGTTTCTTTGTATAATTTACTCCTCGAGTCCTCTTTAAAGGAGAATCGTGTAGATTATGTGACTTGGCTGTATAAGGATATGATTGCTGCAAGGGTGAAACCAGAAACTTATACTTTTAATCTCTTGATTTCTGAGTTATGTGAGTCGGGTCATGTAGCAGATGCCCGGCAGGTGTTTGATAAAATGTCTGAGAAGGGCTGTAGACCAAACGAGTACAGTATTGGGTTATTAATTCGTGGGTACTGTAAATCTGGGCTTCATAACTATGCCGTTCAGCTTTTGAATGGGATGAACAGGTACGGTATTTTACCCAACAGAGTTGCGTACAATACTTTGTTATCTTATTTTTGTAAACAAGGTAAAACTGACGAGGCTGAGAAATTAGTTGAGCAGATGAGAAATGACGGTCTCTTACCAGATGTTGTTACTTTCAATTCTAGGATATCAGCTCTTTGTAAATCCAGTCAAATTCTAGAAGCTTCTAGGATTTTTCGAGATATGCAAATAGATGAAGAATTGGGATTGCCTCAGCCTAATATCGTGACGTATAGTTTAATGCTAGAGGGGTACTGCAATGAAGGAATGATAGAAGAAGCGGAGAGTCTGTTCGACTATATGAAAAAAGTAGACGGTTTTTTGAACTTGGAGAGCTATAATACGTGGTTGTTGGGTTTGGTTAGGAATGGGAAACTCTTGGAAGCAAATTTAGTTCTTGAAGAGATGGTACATAGAGGAATGGAACCTAATATTTACTCCTATAATATTGTAATGGACGGACTTTGCAAAAATGGAATGCTCTCTGAGGCAAGAACAACGATGGGTATAATGAGAGGTAATGGTATAGCTCCTGATAAGGTAACCTATAGTACGTTACTTCATGGATATTGCAGTAAAGGGAAAGTACTTGAAGCCAATCATATTCTTTATGAAATGATGCAGAGTGGTTGCTTTCCAAATATTTATACTTGTAACATATTGCTTCATAGTCTTTGGAAAGAGGGGAGAATATCAGAAGCAGAGGAGGTGCTGCAAAATATGAACAAGAGAGGTTATGGATTAGATACAGTGACATGCAATATTGTGATTGATGGGCTCTGTAAAAATGGGAAGTTGGATAAAGCTATAGAAATTGTGAGTGGAATGTGGACCCATGGAAGTGCTGCTCTTGGAAGTCTAGGCAACTCTTTTATAGGCTTGTTTGATGATAGCTATAATGGGAACAAATGCACGCCTGATCTGATCACATATTCTACCATTATTAGTGGGTTATGCAAGATTGGAAGGTTTGATGAAGCAAAGAAGAAGTTTATGGAGATGATTGGGAAGGGCTTAAAGCCTGATTCTGCGATTTATGATACTTTTATACTTAATTACTGTAACCAGGGAAAAATATCATCTGCCTTTCGGGTTTTAAAGGAAATGGAGAAAAAGGGTTGCAACAAGAGCCTTCAAACTTATAATGCACTGATTCTGGGCTTAGGTAGCAAAAATCAAGTCTTTGAAATATATGGGCTTATGGATGAGATGAGAGAACGGGGGGTTTCACCTAATCTTTGCACTTATAATAACTTGATTAGCTGTCTATGTGAAGGAGGGAGAATCAGAGAAGCCACTTCTGTTTTGTATGAGATGCTTCAGAAGGGAATATTCCCTAACATATCTTCCTTCAGGTTTTTGATGAAAGCTTTCTGCAAGGCTTGTGAATTTGGAGAAGCTCAGGAGGTATTTGAGATAGGCTTAAATGTATGCGGCCGAAAGGAACCCTTGTATAGTTTGATGTTCAATGAGTTACAAGCTGGAGGGGAAGTAATGAAAGCTAAGGAACTATTTGAAGATGCATTAGATATGTCATTTGACTTGGGTAATTTCATGTATAAGGATCTTATCGGAAGGCTTTGTAAAGATGAAAAGTTAGAAGATGCTAGTGCCATTCTTCATAAGATGATTGGTAAAGGATATGGATTTGATCCTGCATCATTCATGCCAGTAATTGACAGTTTGAGTAAAAATGGACTGAAGCATGAGGTTGATGAACTTGCAGAAAGGATGATGGAAATGGCCTCTGAAAATCAGGTTGCAAATAAGGTTATGTATCAAAGTGGAAAGAAGAGAATCCACGGAAAAAGACCACAGAAACACGATGAAAGTGATTGGCGAAGTATTCTCCACAGAGAGGATGGAAGTGGAATTGCACAGAAAGCTCTTATACGTGTGCAGAAAGGTTTGGGTCAGGGAAGTATATCGAATTTGCAGTCCAAGATCAATGAATATCTTGATTACTGGGATGGTGATGGTTGA 2619 39.33 MEVTTKLTIKALYKNINNPKLAWHLFKHIFCDTNLQCVPVIARILAGAKMDREIDELYELLLVSQNGEASHSSLLFLVRILARSGLSEKAVSQFRSIRIRFPENTPSVSLYNLLLESSLKENRVDYVTWLYKDMIAARVKPETYTFNLLISELCESGHVADARQVFDKMSEKGCRPNEYSIGLLIRGYCKSGLHNYAVQLLNGMNRYGILPNRVAYNTLLSYFCKQGKTDEAEKLVEQMRNDGLLPDVVTFNSRISALCKSSQILEASRIFRDMQIDEELGLPQPNIVTYSLMLEGYCNEGMIEEAESLFDYMKKVDGFLNLESYNTWLLGLVRNGKLLEANLVLEEMVHRGMEPNIYSYNIVMDGLCKNGMLSEARTTMGIMRGNGIAPDKVTYSTLLHGYCSKGKVLEANHILYEMMQSGCFPNIYTCNILLHSLWKEGRISEAEEVLQNMNKRGYGLDTVTCNIVIDGLCKNGKLDKAIEIVSGMWTHGSAALGSLGNSFIGLFDDSYNGNKCTPDLITYSTIISGLCKIGRFDEAKKKFMEMIGKGLKPDSAIYDTFILNYCNQGKISSAFRVLKEMEKKGCNKSLQTYNALILGLGSKNQVFEIYGLMDEMRERGVSPNLCTYNNLISCLCEGGRIREATSVLYEMLQKGIFPNISSFRFLMKAFCKACEFGEAQEVFEIGLNVCGRKEPLYSLMFNELQAGGEVMKAKELFEDALDMSFDLGNFMYKDLIGRLCKDEKLEDASAILHKMIGKGYGFDPASFMPVIDSLSKNGLKHEVDELAERMMEMASENQVANKVMYQSGKKRIHGKRPQKHDESDWRSILHREDGSGIAQKALIRVQKGLGQGSISNLQSKINEYLDYWDGDG 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9746364 9751646 - Conep12aG0131500.1 Cone12ag1274 450118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 42 192 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 193 279 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 348 444 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 553 600 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 623 672 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 323 369 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 211 260 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 390 437 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat family 141 190 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 280 347 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 585 689 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Cone12ag1274 872 PANTHER OS03G0856100 PROTEIN 161 403 - -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 277 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cone12ag1274 872 MobiDBLite consensus disorder prediction 809 830 - -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 288 315 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 214 248 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 557 586 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 626 660 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 249 275 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 144 178 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 324 357 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 592 624 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 182 212 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 393 427 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 521 555 IPR002885 -
Cone12ag1274 872 NCBIfam pentatricopeptide repeat 463 492 IPR002885 -
Cone12ag1274 872 Coils Coil 776 796 - -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat 731 759 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 445 584 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 Gene3D Tetratricopeptide repeat domain 690 849 IPR011990 GO:0005515(InterPro)
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 316 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat 457 488 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat 516 546 IPR002885 -
Cone12ag1274 872 Pfam PPR repeat 284 314 IPR002885 -
Cone12ag1274 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1274 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29